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Volume 22, Number 3—March 2016

Whole-Genome Sequencing to Determine Origin of Multinational Outbreak of Sarocladium kiliense Bloodstream Infections

Kizee A. EtienneComments to Author , Chandler C. Roe, Rachel Smith, Snigdha Vallabhaneni, Carolina Duarte, Patricia Escandón, Elizabeth Castañeda, Beatriz L. Gómez, Catalina de Bedout, Luisa F. López, Valentina Salas, Luz Maria Hederra, Jorge Fernández, Paola Pidal, Juan Carlos Hormazabel, Fernando Otaíza-O’Ryan, Fredrik O. Vannberg, John Gillece, Darrin Lemmer, Elizabeth M. Driebe, David M. Engelthaler, and Anastasia P. Litvintseva
Author affiliations: Centers for Disease Control and Prevention, Atlanta, Georgia, USA (K.A. Etienne, R.M. Smith, S. Vallabhaneni, A.P. Litvintseva); Georgia Institute of Technology, Atlanta (K.A. Etienne, F.O. Vannberg); Translational Genomics Research Institute, Flagstaff, Arizona, USA (C.C. Roe, J. Gillece, D. Lemmer, E.M. Driebe, D.M. Engelthaler); Instituto Nacional de Salud, Bogota, Colombia (C. Duarte, P. Escandón, E. Castañeda); Universidad del Rosario, Bogota (B.L. Gómez); Corporación para Investigaciones Biológicas, Medellín, Colombia (B.L. Gómez, C. de Bedout, L.F. López); Instituto de Salud Publica de Chile, Santiago, Chile (V. Salas, L.M. Hederra, J. Fernández, P. Pidal, J.C. Hormazabel); Ministry of Health, Santiago (F. Otaíza-O’Ryan)

Main Article


Whole-genome sequenced strains of Sarocladium kiliense, Chile and Colombia, 2013–2014*

Laboratory identification Type of isolate Source of isolate Origin of isolate Depth of coverage, ×
B10646 Patient Chile Blood 228
B10648 Patient Chile Blood 218
B10650 Patient Chile Blood 72
B10651 Patient Chile Blood 193
B10652 Patient Chile Blood 119
B10653 Patient Chile Blood 67
B10657 Patient Chile Blood 354
B10660 Ondansetron Chile Vial 78
B10661 Ondansetron Chile Vial 29
B10731 Patient Colombia Blood 75
B10732 Patient Colombia Blood 34
B10734 Patient Colombia Blood 67
B10743 Patient Colombia Blood 37
B10748 Ondansetron Colombia Vial 98
B10749 Ondansetron Colombia Vial 152
B10762 Patient Germany Skin lesion 54
B10763 Patient Utah, USA Eye 41
B10764 Patient Wisconsin, USA Skin lesion 43
B10765 Patient Pennsylvania, USA Blood 27
B10766 Patient Florida, USA CSF 74
B10767 Patient Texas, USA BAL 51
B10971 Patient Colombia Blood 101
B10972 Patient Colombia Blood 95
B10973 Patient Colombia Blood 62
B10974 Patient Colombia Blood 103
B10975 Patient Colombia Blood 113
B10976 Patient Colombia Blood 191
B10977 Patient Colombia Blood 261
B10978 Ondansetron Colombia Vial 150
B10979 Ondansetron Colombia Vial 126
B10980 Ondansetron Colombia Vial 152
B5504 Patient Pennsylvania, USA Eye 138
B5505 Patient Pennsylvania, USA Eye 38
ATCC64672 Dog Costa Rica Eye 26
CBS155 Environment India Soil 100
CBS157 Environment India Soil 82

*ATCC, American Type Culture Collection; CBS, Centraalbureau voor Schimmelcultures.

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Page created: February 17, 2016
Page updated: February 17, 2016
Page reviewed: February 17, 2016
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.