Volume 23, Number 7—July 2017
Dispatch
Novel Pestivirus Species in Pigs, Austria, 2015
Benjamin Lamp
, Lukas Schwarz, Sandra Högler, Christiane Riedel, Leonie Sinn, Barbara Rebel-Bauder, Herbert Weissenböck, Andrea Ladinig, and Till Rümenapf
, Lukas Schwarz, Sandra Högler, Christiane Riedel, Leonie Sinn, Barbara Rebel-Bauder, Herbert Weissenböck, Andrea Ladinig, and Till Rümenapf
Table
BLAST analysis of the 12 putative mature proteins and the polyprotein of novel pestivirus Linda virus from pigs with congenital tremor, Austria, 2015*
| Putative mature protein | Amino acid region | Best BLAST hit (GenBank accession no.) | Alignment coverage, % | E-value | Identity, % |
|---|---|---|---|---|---|
| Npro | 1–182 | BV (YP_008992092.1) | 96 | 4 × 10–64 | 60 |
| Core | 183–283 | BV (YP_008992092.1) | 95 | 3 × 10–43 | 83 |
| Erns | 284–504 | BV (YP_008992092.1) | 100 | 5 × 10–117 | 74 |
| E1 | 505–702 | BV (YP_008992092.1) | 100 | 3 × 10–82 | 67 |
| E2 | 703–1077 | BV (YP_008992092.1) | 98 | 4 × 10–140 | 53 |
| P7 | 1078–1152 | BV (YP_008992092.1) | 100 | 1 × 10–25 | 60 |
| NS2 | 1153–1608 | BV (YP_008992092.1) | 99 | 0.0 | 63 |
| NS3 | 1609–2291 | BV (YP_008992092.1) | 100 | 0.0 | 85 |
| NS4A | 2292–2354 | BV (YP_008992092.1) | 100 | 2 × 10–28 | 81 |
| NS4B | 2355–2701 | BV (YP_008992092.1) | 100 | 0.0 | 78 |
| NS5A | 2702–3205 | BV (YP_008992092.1) | 100 | 0.0 | 53 |
| NS5B | 3206–3923 | BV (YP_008992092.1) | 99 | 0.0 | 73 |
*BV, Bungowannah virus; E, envelope; NS, nonstructural.
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