Volume 23, Number 7—July 2017
Dispatch
Novel Pestivirus Species in Pigs, Austria, 2015
Benjamin Lamp
, Lukas Schwarz, Sandra Högler, Christiane Riedel, Leonie Sinn, Barbara Rebel-Bauder, Herbert Weissenböck, Andrea Ladinig, and Till Rümenapf
, Lukas Schwarz, Sandra Högler, Christiane Riedel, Leonie Sinn, Barbara Rebel-Bauder, Herbert Weissenböck, Andrea Ladinig, and Till Rümenapf
Table
BLAST analysis of the 12 putative mature proteins and the polyprotein of novel pestivirus Linda virus from pigs with congenital tremor, Austria, 2015*
| Putative mature protein | Amino acid region | Best BLAST hit (GenBank accession no.) | Alignment coverage, % | E-value | Identity, % |
|---|---|---|---|---|---|
| Npro | 1–182 | BV (YP_008992092.1) | 96 | 4 × 10–64 | 60 |
| Core | 183–283 | BV (YP_008992092.1) | 95 | 3 × 10–43 | 83 |
| Erns | 284–504 | BV (YP_008992092.1) | 100 | 5 × 10–117 | 74 |
| E1 | 505–702 | BV (YP_008992092.1) | 100 | 3 × 10–82 | 67 |
| E2 | 703–1077 | BV (YP_008992092.1) | 98 | 4 × 10–140 | 53 |
| P7 | 1078–1152 | BV (YP_008992092.1) | 100 | 1 × 10–25 | 60 |
| NS2 | 1153–1608 | BV (YP_008992092.1) | 99 | 0.0 | 63 |
| NS3 | 1609–2291 | BV (YP_008992092.1) | 100 | 0.0 | 85 |
| NS4A | 2292–2354 | BV (YP_008992092.1) | 100 | 2 × 10–28 | 81 |
| NS4B | 2355–2701 | BV (YP_008992092.1) | 100 | 0.0 | 78 |
| NS5A | 2702–3205 | BV (YP_008992092.1) | 100 | 0.0 | 53 |
| NS5B | 3206–3923 | BV (YP_008992092.1) | 99 | 0.0 | 73 |
*BV, Bungowannah virus; E, envelope; NS, nonstructural.
Page created: June 19, 2017
Page updated: June 19, 2017
Page reviewed: June 19, 2017
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
Content Credential