Volume 24, Number 9—September 2018
Research
From Culturomics to Clinical Microbiology and Forward
Grégory Dubourg, Sophie Baron, Frédéric Cadoret, Carine Couderc, Pierre-Edouard Fournier, Jean-Christophe Lagier, and Didier Raoult
Table 3
Identification of bacteria discovered as a part of culturomics studies in the clinical microbiology laboratory as commensals, Marseille, France*
| Species | MALDI-TOF mass spectrometry identification (score) | Specimen | Duplicates per patient?† | Additional information |
|---|---|---|---|---|
| Actinomyces bouchesdurhonensis | A. bouchesdurhonensis (2) | Larynx biopsy | No | Polymicrobial |
| Alistipes jeddahensis | Alistipes jeddahensis (2.38) | Liquid feces | No | Seeking Salmonella spp. |
| A. jeddahensis | A. jeddahensis (2.45) | Liquid feces | No | Seeking Salmonella spp. |
| A. jeddahensis | A. jeddahensis (2.5) | Liquid feces | No | Seeking Salmonella spp. |
| Anaerosalibacter massiliensis | Anaerosalibacter massiliensis (1.78) | Rectal swab | No | Seeking MDR bacteria |
| Butyricimonas phocaeensis | Butyricimonas phoaceensis (2.36) | Liquid feces | No | Seeking toxigenic CD |
| Clostridium culturomicsense | Clostridium culturomicsense (2) | Liquid feces | No | Seeking toxigenic CD |
| Clostridium jeddahtimonense | Clostridium jeddahtimonense (2.1) | Liquid feces | No | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.3) | Liquid feces | No | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.4) | Liquid feces | No | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.1) | Liquid feces | No | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.2) | Liquid feces | Yes | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (1.72) | Liquid feces | Yes | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.3) | Liquid feces | No | Seeking toxigenic CD |
| C. jeddahtimonense | C. jeddahtimonense (2.1) | Liquid feces | No | Seeking toxigenic CD |
| Clostridium massilioamazoniense | Clostridium massilioamazoniense (1.7) | Liquid feces | No | Seeking toxigenic CD |
| Clostridium saudii | Clostridium saudii (2.5) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.74) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (2.5) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.94) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (2.18) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.77) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.93) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (2.1) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.9) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (2.47) | Liquid feces | No | Seeking toxigenic CD |
| C. saudii | C. saudii (1.83) | Liquid feces | No | Seeking toxigenic CD |
| Corynebacterium lascolaense | Corynebacterium lascolaense (1.85) | Intrauterine device | No | Not considered |
| C. lascolaense | C. lascolaense (2.1) | Urine | No | Growth not significant |
| Corynebacterium phoceense | Corynebacterium phoceense (2.1) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (1.9) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (2.1) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (2) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (2.2) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (2) | Vagina | No | Polymicrobial |
| C. phoceense | C. phoceense (2.2) | Vagina | No | Not considered |
| C. phoceense | C. phoceense (1.97) | Urine | No | Polymicrobial |
| Gabonia massiliensis | Gabonia massiliensis (2.3) | Liquid feces | No | Seeking MDR bacteria |
| Pseudomonas massiliensis | Pseudomonas massiliensis (2) | Skin swab | Yes | Seeking S. aureus carriage |
| P. massiliensis |
P. massiliensis (2.5) |
Skin swab |
Yes |
Seeking S. aureus carriage |
| *MALDI-TOF, matrix-assisted laser desorption/ionization time-of-flight. †Replicated isolates in different specimens from the same patient. | ||||
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