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Volume 25, Number 3—March 2019
Research

SNP-IT Tool for Identifying Subspecies and Associated Lineages of Mycobacterium tuberculosis Complex

Samuel Lipworth1Comments to Author , Rana Jajou1, Albert de Neeling, Phelim Bradley, Wim van der Hoek, Gugu Maphalala, Maryline Bonnet, Elizabeth Sanchez-Padilla, Roland Diel, Stefan Niemann, Zamin Iqbal, Grace Smith, Tim Peto, Derrick Crook, Timothy Walker2, and Dick van Soolingen2
Author affiliations: University of Oxford, Oxford, UK (S. Lipworth, T. Peto, D. Crook, T. Walker); National Institute for Public Health and the Environment, Bilthoven, the Netherlands (R. Jajou, A. de Neeling, W. van der Hoek, D. van Soolingen); Wellcome Trust Centre for Human Genetics, Oxford (P. Bradley); National Reference Laboratory, Ministry of Health, Mbabane, Swaziland (G. Maphalala); Epicentre, Paris, France (M. Bonnet, E. Sanchez-Padilla); University of Kiel, Kiel, Germany (R. Diel); Borstel Research Centre, Borstel, Germany (S. Niemann); European Bioinformatics Institute, Cambridge, UK (Z. Iqbal); Public Health England, Birmingham, UK (G. Smith)

Main Article

Figure 1

Description of the Mycobacterium tuberculosis complex datasets used in the 3 stages of calibration, validation, and application to a clinical set of the new SNPs to Identify TB tool. PHE, Public Health England (Birmingham, UK); RIVM, Netherlands National Institute for Public Health and the Environment (Bilthoven, the Netherlands). SNP, single-nucleotide polymorphism.

Figure 1. Description of the Mycobacterium tuberculosis complex datasets used in the 3 stages of calibration, validation, and application to a clinical set of the new SNPs to Identify TB tool. PHE, Public Health England (Birmingham, UK); RIVM, Netherlands National Institute for Public Health and the Environment (Bilthoven, the Netherlands); SNP, single-nucleotide polymorphism.

Main Article

1These authors contributed equally to this article.

2Joint senior authors.

Page created: February 19, 2019
Page updated: February 19, 2019
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