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Volume 26, Number 5—May 2020
Dispatch

Genetic Characterization of Japanese Encephalitis Virus Genotype 5 Isolated from Patient, South Korea, 2015

Jae Hoon Woo1, Young Eui Jeong1, Jung Eun Jo, Sang-Mu Shim, Jungsang Ryou, Kyung-Chang Kim, Won Ja Lee, and Joo-Yeon LeeComments to Author 
Author affiliations: Centers for Disease Control and Prevention, Chongju, South Korea (J.H. Woo, Y.E. Jeong, J.E. Jo, S.-M. Shim, J. Ryou, K.-C. Kim, W.J. Lee, J.-Y. Lee); MIRIMEDIX Corporation, Gangwon, South Korea (Y.E. Jeong)

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Figure 2

Phylogenetic trees of Japanese encephalitis virus (JEV) genotypes 1, 3, and 5, South Korea. A) Entire open reading frame of JEV human isolates. B) Envelope protein genes of JEV human isolates. C) Divergence time estimation based on the envelope protein genes of JEV genotype 5. Bootstrap probabilities (values along branches) of each node were calculated by using 1,000 replicates. Branches showing quartet puzzling reliability >70% can be considered well supported. Black circles indicate K15P38

Figure 2. Phylogenetic trees of Japanese encephalitis virus (JEV) genotypes 1, 3, and 5, South Korea. A) Entire open reading frame of JEV human isolates. B) Envelope protein genes of JEV human isolates. C) Divergence time estimation based on the envelope protein genes of JEV genotype 5. Bootstrap probabilities (values along branches) of each node were calculated by using 1,000 replicates. Branches showing quartet puzzling reliability >70% can be considered well supported. Black circles indicate K15P38 strain from patient samples. Scale bars indicate nucleotide substitutions per site.

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1These authors contributed equally to this article.

Page created: April 16, 2020
Page updated: April 16, 2020
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