Volume 26, Number 5—May 2020
Dispatch
Genetic Characterization of Japanese Encephalitis Virus Genotype 5 Isolated from Patient, South Korea, 2015
Jae Hoon Woo1, Young Eui Jeong1, Jung Eun Jo, Sang-Mu Shim, Jungsang Ryou, Kyung-Chang Kim, Won Ja Lee, and Joo-Yeon Lee
Table 1
Data on 67 JEV strains analyzed in study of JEV in patient samples from South Korea*
| Strain | GenBank accession no. | Country | Year | Genotype | Host |
|---|---|---|---|---|---|
| ME802 | KY927819 | Cambodia | 2013 | 1 | Human |
| XJ69 | EU880214 | China | 2007 | 1 | Mosquito |
| YN0967 | JF706268 | China | 2009 | 1 | Mosquito |
| SH53 | JN381850 | China | 2001 | 1 | NA |
| SD0810 | JF706286 | China | 2008 | 1 | Mosquito |
| HN0626 | JN381837 | China | 2006 | 1 | NA |
| HN0421 | JN381841 | China | 2004 | 1 | NA |
| GX0519 | JN381835 | China | 2005 | 1 | NA |
| 131V | GU205163 | China | 2007 | 1 | Human |
| GSBY0801 | JF706274 | China | 2008 | 1 | Mosquito |
| GS07TS11 | JN381843 | China | 2007 | 1 | NA |
| XJP613 | EU693899 | China | 2007 | 1 | Mosquito |
| SH80 | JN381848 | China | 2001 | 1 | NA |
| SH17M-07 | EU429297 | China | 2007 | 1 | Mosquito |
| SCYA201201 | KM658163 | China | 2012 | 1 | Swine |
| SC04–17 | GU187972 | China | 2004 | 1 | Mosquito |
| JX61 | GU556217 | China | 2008 | 1 | Swine |
| HEN0701 | FJ495189 | China | 2007 | 1 | Swine |
| GZ56 | HM366552 | China | 2008 | 1 | Human |
| XZ0938 | HQ652538 | China (Tibet) | 2009 | 1 | Mosquito |
| Ishikawa | AB051292 | Japan | 1998 | 1 | Mosquito |
| KV1899 | AY316157 | South Korea | 1999 | 1 | NA |
| K94P05 | AF04551 | South Korea | 1994 | 1 | Mosquito |
| K05GS | KR908702 | South Korea | 2005 | 1 | Mosquito |
| TC2009–1 | JF499790 | Taiwan | 2009 | 1 | Mosquito |
| 4790–85 | GQ902062 | Thailand | 1985 | 1 | Human |
| 90VN70 | HM228921 | Vietnam | 1990 | 1 | Human |
| FU | AF217620 | Australia | 1995 | 2 | NA |
| C17 | KX945367 | Angola | 2016 | 3 | Human |
| SH3 | JN381864 | China | 1987 | 3 | NA |
| P3 | U47032 | China | 1949 | 3 | Human |
| GD | JN711458 | China | 2009 | 3 | Bat |
| FJ0339 | JN381859 | China | 2003 | 3 | NA |
| Fj02–29 | JF706273 | China | 2002 | 3 | Human |
| Beijing-1 | L48961 | China | 1949 | 3 | Human |
| SA14 | KU323483 | China | 1954 | 3 | NA |
| SA14–14–2 | AF315119 | China | 1954 | 3 | Vaccine stain |
| B58 | FJ185036 | China | 1986 | 3 | Bat |
| HW | AY849939 | China | 1988 | 3 | NA |
| Whe | EF107523 | China | 1988 | 3 | Swine |
| GB30 | FJ185037 | China | 1997 | 3 | Bat |
| SH0601 | EF543861 | China | 2006 | 3 | NA |
| Vellore P20778 | AF080251 | India | 1958 | 3 | NA |
| 04940–4 | EF623989 | India | 2002 | 3 | Mosquito |
| IND-WB-JE2 | JX072965 | India | 2010 | 3 | Human |
| GP78 | AF075723 | India | 1978 | 3 | NA |
| 57434 | EF623988 | India | 2005 | 3 | Human |
| Nakayama | EF571853 | Japan | 1935 | 3 | Human |
| JaOArS982 | M18370 | Japan | 1982 | 3 | Mosquito |
| JaOH0566/Japan/1966/human | AY508813 | Japan | 1966 | 3 | NA |
| JaTAn1/75 | AB551990 | Japan | 1975 | 3 | Swine |
| ML17 | AY508812 | Japan | 1981 | 3 | NA |
| K87P39 | AY585242 | South Korea | 1987 | 3 | Mosquito |
| T1P1 | AF254453 | Taiwan | 1997 | 3 | Mosquito |
| Ling | L78128 | Taiwan | 1965 | 3 | Human |
| JKT6468 | AY184212 | Indonesia | 1981 | 4 | Mosquito |
| XZ0934 | JF915894 | China (Tibet) | 2009 | 5 | Mosquito |
| Muar | HM596272 | Malaysia | 1952 | 5 | Human |
| 10–1827 | JN587258 | South Korea | 2010 | 5 | Mosquito |
| K12HC959 | KJ420589 | South Korea | 2012 | 5 | Mosquito |
| K12AS1148 | KJ420590 | South Korea | 2012 | 5 | Mosquito |
| K12AS1151 | KJ420591 | South Korea | 2012 | 5 | Mosquito |
| K12YJ1174 | KJ420593 | South Korea | 2012 | 5 | Mosquito |
| K12YJ1182 | KJ420594 | South Korea | 2012 | 5 | Mosquito |
| K12YJ1203 | KJ420592 | South Korea | 2012 | 5 | Mosquito |
| K13GB57 | KM496503 | South Korea | 2013 | 5 | Mosquito |
*JEV, Japanese encephalitis virus; NA, not available.
1These authors contributed equally to this article.
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