Sabiá Virus–Like Mammarenavirus in Patient with Fatal Hemorrhagic Fever, Brazil, 2020
Fernanda de Mello Malta
1, Deyvid Amgarten
1, Ana Catharina de Seixas Santos Nastri, Yeh-Li Ho, Luciana Vilas Boas Casadio, Marcela Basqueira, Gloria Selegatto, Murilo Castro Cervato, Amaro Nunes Duarte-Neto, Hermes Ryoiti Higashino, Felipe Arthur Faustino Medeiros, José Luiz Pinto Lima Gendler, Anna S. Levin, and João Renato Rebello Pinho
Author affiliations: Hospital Israelita Albert Einstein, São Paulo, Brazil (F.M. Malta, D. Amgarten, M. Basqueira, M.C. Cervato, J.R.R. Pinho); Universidade de São Paulo, São Paulo (D. Amgarten, A.C. de Seixas Santos Nastri, Y.-L. Ho, L.V.R. Casadio, G. Selegatto, A.N. Duarte-Neto, H.R. Higashino, F.A.F. Medeiros, J.L.P.L. Gendler, A.S. Levin, J.R.R. Pinho)
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Figure
Figure. Genomic and phylogenetic analysis of SABV-like mammarenavirus (SP2019-01) from a patient with fatal hemorrhagic fever, Brazil, 2020. A) Genome plots comparing strain SP2019-01 with SABV strain SPH114202, showing identity throughout the genome and variant sites (black lines). B) Maximum-likelihood tree of SP2019-01 (red box) based on the alignment of arenavirus sequences. Tree was rooted in the Haartman Institute virus isolate sequence, and bootstrap values are shown next to the branches. CDS, coding sequence; GC, content of guanosine and cytosine; L, large; S, small; SABV, Sabiá virus. Scale bar indicates nucleotide substitutions per site.
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Page updated: May 19, 2020
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