Volume 26, Number 8—August 2020
Research
Presence of Segmented Flavivirus Infections in North America
Table
Percentages of pairwise amino acid distances between NS5 protein of FLSV-US and known JMTV-like viruses on the basis of the NS5 protein region corresponding to aa positions 55 to 913 on JMTV reference sequence YP_009029999.1
Sequence |
ID* |
A† |
B |
C |
D |
E |
F |
G |
H |
I |
J |
K |
L |
M |
N |
FLSV-US NS5† | A | ||||||||||||||
AOD41697 JMTV | B | 31.2 | |||||||||||||
AVL26136 AMBV | C | 31.8 | 2.8 | ||||||||||||
AXE71873 ALSV | D | 34.7 | 19.6 | 19.8 | |||||||||||
AXH37995 JMTV | E | 34.7 | 7 | 7.3 | 19.4 | ||||||||||
AXH37997 JMTV | F | 32.2 | 6.9 | 7.2 | 19.4 | 0.1 | |||||||||
AYV61016 JMTV | G | 31.5 | 2.8 | 2.9 | 19 | 6.8 | 6.6 | ||||||||
AYV61021 JMTV | H | 31.8 | 4 | 4.3 | 19.4 | 7.3 | 7.2 | 3.1 | |||||||
AYV61033 JMTV | I | 31.9 | 4.1 | 4.4 | 19.3 | 7.2 | 7.1 | 3.3 | 0.6 | ||||||
QBQ65056 YTV | J | 33.4 | 20.4 | 20.5 | 18.3 | 20.1 | 20.1 | 20.1 | 20 | 19.9 | |||||
QCB64647 RFLV | K | 31.5 | 2.4 | 1.5 | 19.1 | 6.4 | 6.3 | 2.3 | 3.4 | 3.5 | 19.9 | ||||
QCW07567 KTV | L | 31.7 | 3.5 | 3.6 | 19.4 | 7.2 | 7.1 | 2.6 | 2.9 | 3 | 20.4 | 3 | |||
YP_009029999 JMTV | M | 31.8 | 3.7 | 2.3 | 19.6 | 7.2 | 7.1 | 3.4 | 4.4 | 4.4 | 20.4 | 2.2 | 3.7 | ||
YP_009351917 MTV | N | 30.8 | 3.7 | 3.8 | 19.7 | 6.9 | 6.8 | 2.4 | 2.7 | 2.8 | 20.4 | 3.5 | 2.7 | 4.2 |
ALSV, Alongshan virus; AMBV, Amblyomma virus; ID, sequence identifier; JMTV, Jingmen tick virus; KYV, Kindia tick virus; MTV, Mogiana tick virus; RFLV, Rhipicephalus flavi-like virus; YTV, Yanggou tick virus.
†Virus identified in Pennsylvania, USA, as part of this study.
*Identifiers A–N in the top row represent the corresponding A-Z sequences in the left-hand column.
1These authors contributed equally to this article.