Volume 27, Number 1—January 2021
Dispatch
Ocular Filariasis in Human Caused by Breinlia (Johnstonema) annulipapillata Nematode, Australia
Table
Primer sequences used in PCR of the amplification regions of the SSU or cox-1 genes of Breinlia sp. nematodes from a patient with ocular filariasis, Brisbane, Queensland, Australia, 2019*
Designation | Primer pair | Oligonucleotide sequence, 5¢ → 3¢ | Annealing temperature, °C (time)† | Expected size, bp | Reference |
---|---|---|---|---|---|
SSU | |||||
1° PCR |
F18ScF1 | ACCGCCCTAGTTCTGACCGTAAA | 58 (45 s) |
830 |
(6) |
F18ScR1 |
GGTTCAAGCCACTGCGATTAAAGC |
||||
cox-1 | |||||
1° PCR | FCo1extdF1 | TATAATTCTGTTYTDACTA | 52 (45 s) | 970 | (6) |
FCo1extdR1 | ATGAAAATGAGCYACWACATAA | ||||
2° PCR | COIintF | TGATTGGTGGTTTTGGTAA | 52 (45 s) | 650 | (7) |
COIintR | ATAAGTACGAGTATCAATATC |
* cox-1, cytochrome c oxidase subunit 1; SSU small subunit of nuclear ribosomal RNA. †All PCRs used 35 cycles with an initial denaturation at 94°C for 5 min, all subsequent denaturation cycles were 30 s, and all extensions were 1 min.
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