Volume 27, Number 11—November 2021
Research
Multidrug-Resistant Methicillin-Resistant Staphylococcus aureus Associated with Bacteremia and Monocyte Evasion, Rio de Janeiro, Brazil
Table 4
Lineages of methicillin-resistant Staphylococcus aureus clonal complex 5 isolates, Rio de Janeiro, Brazil, 2014–2017*
Clones† | Blood | Anterior nasal swab | Nonblood | Total (%) |
---|---|---|---|---|
ST105-SCCmecII-t002 | 41 | 20 | 14 | 75 (41.9)‡ |
ST5-SCCmecIV-t002 | 11 | 13 | 19 | 43 (24.0) |
ST5-SCCmecII-t539 | 5 | 4 | 8 | 17 (9.5) |
ST1635-SCCmecIV-t002 | 2 | 4 | 4 | 10 (5.6) |
ST5-SCCmecII-t067 | 2 | 3 | 1 | 6 (3.4) |
ST5-SCCmecII-t2666 | 2 | 2 | 1 | 5 (2.8) |
ST105-SCCmecII-NT | 3 | 0 | 0 | 3 (1.7) |
ST105-SCCmecII-t010 | 1 | 0 | 1 | 2 (1.1) |
ST4876-SCCmecII-t002 | 1 | 0 | 1 | 2 (1.1) |
ST5-SCCmecIV-t1154 | 1 | 1 | 0 | 2 (1.1) |
ST5-SCCmecIV-NT | 0 | 2 | 0 | 2 (1.1) |
ST105-SCCmecII-t067 | 1 | 0 | 0 | 1 (0.6) |
ST105-SCCmecII-t539 | 0 | 1 | 0 | 1 (0.6) |
ST1635-SCCmecIV-t062 | 0 | 0 | 1 | 1 (0.6) |
ST1635-SCCmecIV-t450 | 0 | 1 | 0 | 1 (0.6) |
ST1635-SCCmecIV-t769 | 0 | 0 | 1 | 1 (0.6) |
ST5-SCCmecII-t002 | 0 | 1 | 0 | 1 (0.6) |
ST5-SCCmecII-NT | 0 | 1 | 0 | 1 (0.6) |
ST5-SCCmecIV-t061 | 0 | 1 | 0 | 1 (0.6) |
ST5-SCCmecIV-t062 | 0 | 0 | 1 | 1 (0.6) |
ST5-SCCmecIV-t105 | 0 | 1 | 0 | 1 (0.6) |
ST5-SCCmecIV-t586 | 0 | 1 | 0 | 1 (0.6) |
ST5-SCCmecIV-t777 |
0 |
1 |
0 |
1 (0.6) |
Total sequenced/collected§ | 70/145 | 57/123 | 52/114 | 179/382 |
*SCC, staphylococcal chromosome cassette; NT, not typed by spa polymorphism; ST, sequence type. †Clones defined by multilocus sequence type, SCCmec type, and spa polymorphism. ‡p<0.01 by single-variable analysis for blood samples compared with nasal swab and nonblood samples; p = 0.12 when adjusted for private vs. public hospital and year of isolation. §Total isolates sequenced from total no. isolates collected.
1These first authors contributed equally to this article.
2Current affiliation: Fluminense Federal University, Niteroi, Brazil.
3Current affiliation: Fundação Oswaldo Cruz, Rio de Janeiro, Brazil.
4These authors were co–principal investigators.