Skip directly to site content Skip directly to page options Skip directly to A-Z link Skip directly to A-Z link Skip directly to A-Z link
Volume 27, Number 9—September 2021

Severe Acute Respiratory Syndrome Coronavirus 2 in Farmed Mink (Neovison vison), Poland

Lukasz Rabalski, Maciej Kosinski, Teemu Smura, Kirsi Aaltonen, Ravi Kant, Tarja Sironen, Bogusław Szewczyk, and Maciej GrzybekComments to Author 
Author affiliations: University of Gdansk, Gdansk, Poland (L. Rabalski, M. Kosinski, B. Szewczyk); University of Helsinki, Helsinki, Finland (T. Smura, K. Aaltonen, R. Kant, T. Sironen); Medical University of Gdansk, Gdansk, Poland (M. Grzybek)

Main Article

Table 2

Total mean coverage for each sample from 12 mink with a full SARS-CoV-2 genome, Poland*

Sample name Mean coverage of SARS-CoV-2 genome (ONT plus Illumina) Total Illumina reads† Total Illumina SARS-CoV-2 reads† Total Illumina mink reads†
mink_4 949.6 152,609 37 131,204
mink_5 2,776 396,259 159,484 184,135
mink_42 847.8 66,515 868 34,968
mink_46 1,039.5 387,682 25,975 241,788
mink_48 1,151 125,328 9,526 64,363
mink_49 394.6 487,771 1,711 348,017
mink_50 1,839.6 425,333 79,589 246,546
mink_67 882.1 167,963 10,834 114,163
mink_76 723.0 99,660 2,105 77,945
mink_77 16,078.5 2,424,311 1,609,172 662,381
mink_83 111,978.9 13,495,934 12,730,431 611,926
mink_88 1,205.2 1,071,003 2,822 611,787

*ONT, Oxford Nanopore Technology (; SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. †These columns indicate how many Illumina ( reads were generated for each sample and how many of them were classified as SARS-CoV-2 or American mink genomes.

Main Article

Page created: June 16, 2021
Page updated: December 08, 2021
Page reviewed: December 08, 2021
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.