Volume 27, Number 9—September 2021
Research
Severe Acute Respiratory Syndrome Coronavirus 2 in Farmed Mink (Neovison vison), Poland
Lukasz Rabalski, Maciej Kosinski, Teemu Smura, Kirsi Aaltonen, Ravi Kant, Tarja Sironen, Bogusław Szewczyk, and Maciej Grzybek
Table 2
Total mean coverage for each sample from 12 mink with a full SARS-CoV-2 genome, Poland*
| Sample name | Mean coverage of SARS-CoV-2 genome (ONT plus Illumina) | Total Illumina reads† | Total Illumina SARS-CoV-2 reads† | Total Illumina mink reads† |
|---|---|---|---|---|
| mink_4 | 949.6 | 152,609 | 37 | 131,204 |
| mink_5 | 2,776 | 396,259 | 159,484 | 184,135 |
| mink_42 | 847.8 | 66,515 | 868 | 34,968 |
| mink_46 | 1,039.5 | 387,682 | 25,975 | 241,788 |
| mink_48 | 1,151 | 125,328 | 9,526 | 64,363 |
| mink_49 | 394.6 | 487,771 | 1,711 | 348,017 |
| mink_50 | 1,839.6 | 425,333 | 79,589 | 246,546 |
| mink_67 | 882.1 | 167,963 | 10,834 | 114,163 |
| mink_76 | 723.0 | 99,660 | 2,105 | 77,945 |
| mink_77 | 16,078.5 | 2,424,311 | 1,609,172 | 662,381 |
| mink_83 | 111,978.9 | 13,495,934 | 12,730,431 | 611,926 |
| mink_88 | 1,205.2 | 1,071,003 | 2,822 | 611,787 |
*ONT, Oxford Nanopore Technology (https://nanoporetech.com); SARS-CoV-2, severe acute respiratory syndrome coronavirus 2. †These columns indicate how many Illumina (https://www.illumina.com) reads were generated for each sample and how many of them were classified as SARS-CoV-2 or American mink genomes.
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