Volume 27, Number 9—September 2021
Dispatch
Highly Pathogenic Avian Influenza A(H5N6) Virus Clade 2.3.4.4h in Wild Birds and Live Poultry Markets, Bangladesh
Table
Gene | GenBank accession no. | Virus | % Identity |
---|---|---|---|
PB2 |
MT872369.1 | A/Whooper swan/Mongolia/25/2020 (H5N6) | 99.83 |
MW108029.1† |
A/duck/Hunan/1.12_YYGK74H3-OC/2018 (H5N6) |
98.65 |
|
PB1 |
MT872369.1 | A/Whooper swan/Mongolia/25/2020 (H5N6) | 99.87 |
MW104086.1 |
A/chicken/Guangdong/7.20_DGCP022-O/2017 (H5N6) |
99.04 |
|
PA |
EPI_ISL_418181 | A/Whooper swan/Xinjiang/13/2020 (A/H5N6) | 99.9 |
EPI_ISL_340825 |
A/Env/Guangdong/Jieyang/C18289059/2018(H5N6) |
99.5 |
|
HA |
EPI_ISL_418175 | A/Whooper swan/Xinjiang/7/2020 (A/H5N6) | 99.8 |
EPI_ISL_340844 |
A/Env/Guangdong/C17285752/QY/2017 (H5N6) |
98.9 |
|
NP |
MT872369.1 | A/Whooper swan/Mongolia/25/2020 (A/H5N6) | 99.65 |
MW108029.1 |
A/duck/Hunan/1.12_YYGK74H3-OC/2018 (H5N6) |
99.64 |
|
NA |
EPI_ISL_418181 | A/Whooper swan/Xinjiang/13/2020 (A/H5N6) | 99.9 |
MW108138.1 |
A/duck/Hunan/11.30_YYGK63E3-OC/2017 (H5N6) |
99.36 |
|
M |
MT872369.1 | A/Whooper swan/Mongolia/25/2020 (H5N6) | 99.6 |
EPI_ISL_340825 |
A/Env/Guangdong/Jieyang/C18289059/2018 (H5N6) |
99.9 |
|
NS | EPI_ISL_418181 | A/Whooper swan/Xinjiang/13/2020 (A/H5N6) | 99.9 |
MW108029.1 | A/duck/Hunan/1.12_YYGK74H3-OC/2018 (H5N6) | 99.29 |
*HA, hemagglutinin; MP, matrix protein; NA, neuraminidase; NP, nucleoprotein; NS, nonstructural protein; PA, acidic polymerase; PB1, basic polymerase 1; PB2, basic polymerase 2. †Nearest virus homologs to A/Ferruginous duck/Bangladesh/42380/2020 (H5N6) excluding the H5N6 viruses from China (Xinjiang), and Mongolia.
Page created: August 10, 2021
Page updated: August 18, 2021
Page reviewed: August 18, 2021
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