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Volume 29, Number 5—May 2023
Research

Use of High-Resolution Geospatial and Genomic Data to Characterize Recent Tuberculosis Transmission, Botswana

Chelsea R. Baker1, Ivan Barilar1, Leonardo S. de Araujo, Anne W. Rimoin, Daniel M. Parker, Rosanna Boyd, James L. Tobias, Patrick K. Moonan, Eleanor S. Click, Alyssa Finlay, John E. Oeltmann, Vladimir N. Minin, Chawangwa Modongo, Nicola M. Zetola2, Stefan Niemann2, and Sanghyuk S. Shin2Comments to Author 
Author affiliations: University of California, Irvine, California, USA (C.R. Baker, D.M. Parker, V.N. Minin, S.S. Shin); Forschungszentrum, Borstel, Germany (I. Barilar, L.S. de Araujo, S. Niemann); University of California, Los Angeles, California, USA (A.W. Rimoin); US Centers for Disease Control and Prevention, Gaborone, Botswana (R. Boyd, A. Finlay); US Centers for Disease Control and Prevention, Atlanta, Georgia, USA (J.L. Tobias, P.K. Moonan, R. Boyd, E.S. Click, A. Finlay, J.E. Oeltmann); Botswana–UPenn Partnership, Gaborone (C. Modongo, N.M. Zetola); Victus Global Botswana Organisation, Gaborone (C. Modongo, N.M. Zetola)

Main Article

Figure 6

Pairwise SNP distances by ≤5 single-nucleotide polymorphism (SNP) genotypic cluster group in study of high-resolution geospatial and genomic data to characterize recent tuberculosis transmission, Gaborone, Botswana, 2012–2016. Box plots with individual data points superimposed display SNP distance summaries by group. Median within-group SNP distance was <5 SNPs for all groups except group A, which had a median of 7 SNPs. Horizontal lines within boxes indicate medians; box tops and bottoms indicate interquartile ranges; error bars indicate 95% CIs.

Figure 6. Pairwise SNP distances by ≤5 single-nucleotide polymorphism (SNP) genotypic cluster group in study of high-resolution geospatial and genomic data to characterize recent tuberculosis transmission, Gaborone, Botswana, 2012–2016. Box plots with individual data points superimposed display SNP distance summaries by group. Median within-group SNP distance was <5 SNPs for all groups except group A, which had a median of 7 SNPs. Horizontal lines within boxes indicate medians; box tops and bottoms indicate interquartile ranges; error bars indicate 95% CIs.

Main Article

1These first authors contributed equally to this article.

2These senior authors contributed equally to this article.

Page created: January 18, 2023
Page updated: April 18, 2023
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