Volume 29, Number 6—June 2023
Research Letter
Genomic Surveillance of Monkeypox Virus, Minas Gerais, Brazil, 2022
Natália R. Guimarães1, Luiz Marcelo R. Tomé1, Ludmila O. Lamounier1, Marcos Vinícius F. Silva1, Maurício T. Lima, Alana Vitor B. da Costa, Kelly Cristina M. Luiz, Ronaldo de Jesus, Giliane de S. Trindade, Danilo B. Oliveira, Flávio G. da Fonseca, Ana Paula S.M. Fernandes, Jaqueline S. de Oliveira, Josiane B.P. Moura, Erna G. Kroon, Marta Giovanetti, Vagner Fonseca, Luiz Alcantara, Talita Emile R. Adelino, and Felipe C. de Melo Iani
Table
Summary statistics of assembled genomes from genomic surveillance of monkeypox virus, Minas Gerais, Brazil, 2022*
| Sample ID | Collection date | Mapped reads | Mean read depth | Coverage, % | Lineage | GISAID ID |
|---|---|---|---|---|---|---|
| 311257928† | 2022 Jun 28 | 241,791 | 208.5 | 90.3 | B.1 | EPI_ISL_13780332 |
| 311261010 | 2022 Jul 1 | 520,016 | 473.6 | 86.5 | B.1.1 | EPI_ISL_16650224 |
| 311261273 | 2022 Jul 1 | 478,258 | 447.8 | 90.7 | B.1 | EPI_ISL_16650225 |
| 311261816 | 2022 Jul 4 | 318,530 | 244.3 | 84.9 | B.1 | EPI_ISL_16650230 |
| 311261841 | 2022 Jul 4 | 388,417 | 347.0 | 93.5 | B.1 | EPI_ISL_16650229 |
| 311262116‡ | 2022 Jul 4 | 334,589 | 234.4 | 83.3 | B.1 | EPI_ISL_16650231 |
| 311262133 | 2022 Jul 4 | 362,965 | 331.9 | 85.3 | B.1.1 | EPI_ISL_16650228 |
| 311262224 | 2022 Jul 4 | 449,397 | 420.0 | 91.4 | B.1 | EPI_ISL_16650226 |
| 311262265 | 2022 Jul 4 | 427,206 | 399.6 | 93.6 | B.1.1 | EPI_ISL_16650227 |
| 311262687 | 2022 Jul 5 | 353,768 | 282.2 | 76.2 | B.1.1 | EPI_ISL_16650233 |
| 311262723 | 2022 Jul 5 | 342,256 | 266.3 | 81.8 | B.1 | EPI_ISL_16650234 |
| 311263370 | 2022 Jul 5 | 388,951 | 308.5 | 80.5 | B.1.1 | EPI_ISL_16650232 |
| 311265338 | 2022 Jul 5 | 344,341 | 299.7 | 82.5 | B.1.1 | EPI_ISL_16650238 |
| 311263885 | 2022 Jul 6 | 296,827 | 256.8 | 78.4 | B.1 | EPI_ISL_16650236 |
| 311263902 | 2022 Jul 6 | 394,450 | 332.8 | 79.2 | B.1.1 | EPI_ISL_16650235 |
| 311264859 | 2022 Jul 7 | 393,675 | 342.8 | 81.0 | B.1.1 | EPI_ISL_16650237 |
| 311266133 | 2022 Jul 8 | 345,305 | 290.7 | 79.1 | B.1.1 | EPI_ISL_16650239 |
| 311266186 | 2022 Jul 8 | 354,920 | 274.4 | 87.8 | B.1 | EPI_ISL_16650240 |
| 311266233 | 2022 Jul 8 | 284,916 | 239.2 | 82.9 | B.1.1 | EPI_ISL_16650241 |
| 311266796 | 2022 Jul 11 | 384,836 | 358.5 | 82.2 | B.1.9 | EPI_ISL_16650243 |
| 311267285 | 2022 Jul 11 | 351,311 | 325.0 | 79.4 | B.1.1 | EPI_ISL_16650242 |
| 311267311 | 2022 Jul 11 | 341,773 | 320.4 | 81.0 | B.1.1 | EPI_ISL_16650244 |
| 311267938 | 2022 Jul 12 | 330,526 | 300.1 | 77.1 | B.1.1 | EPI_ISL_16650245 |
| 311271087§ | 2022 Jul 15 | 581,432 | 594.2 | 97.5 | B.1.1 | EPI_ISL_16650246 |
| 311283035 | 2022 Aug 5 | 590,550 | 584.0 | 96.3 | B.1 | EPI_ISL_16650248 |
| 311287351 | 2022 Aug 12 | 565,565 | 557.1 | 96.5 | B.1.1 | EPI_ISL_16650247 |
| 311288391 | 2022 Aug 15 | 533,148 | 528.6 | 97.1 | B.1.1 | EPI_ISL_16650249 |
| 311291580 | 2022 Aug 22 | 520,820 | 554.3 | 91.7 | B.1 | EPI_ISL_16650262 |
| 311294876 | 2022 Aug 26 | 567,700 | 528.8 | 97.0 | B.1 | EPI_ISL_16650251 |
| 311297067 | 2022 Aug 31 | 539,498 | 454.0 | 94.7 | B.1.2 | EPI_ISL_16650253 |
| 311300630 | 2022 Sep 8 | 532,582 | 549.0 | 88.9 | B.1.1 | EPI_ISL_16650258 |
| 311300699 | 2022 Sep 8 | 476,181 | 514.3 | 82.5 | B.1 | EPI_ISL_16650255 |
| 311303564 | 2022 Sep 13 | 533,191 | 563.8 | 95.9 | B.1.1 | EPI_ISL_16650260 |
| 311309205 | 2022 Sep 26 | 546,501 | 564.2 | 92.9 | B.1.1 | EPI_ISL_16650265 |
*Genome assembly performed by using Burrows-Wheeler Aligner version 0.7.17 (https://github.com/lh3/bwa) and iVar version 1.0 (https://github.com/andersen-lab/ivar) pipeline and lineage ID was assigned to each genome by using Nextclade version 2.8.1 (Nextstrain, https://clades.nextstrain.org). GISAID, https://www.gisaid.org. ID, identification. †First confirmed mpox case in Minas Gerais; patient had travel history to London, UK. ‡Patient had travel history to Portugal and São Paulo, Brazil. §First mpox death reported in Minas Gerais.
1These authors contributed equally to this article.
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