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Volume 29, Number 7—July 2023
Dispatch

Evolutionary Formation and Distribution of Puumala Virus Genome Variants, Russia

Ekaterina BlinovaComments to Author , Andrei Deviatkin, Marat Makenov, Yulia Popova, and Tamara Dzagurova
Author affiliations: Central Research Institute of Epidemiology, Moscow, Russia (E. Blinova, M. Makenov); Russian Academy of Sciences, Moscow (E. Blinova, Y. Popova, T. Dzagurova); Moscow Institute of Physics and Technology, Dolgoprudny, Russia (A. Deviatkin); Sechenov First Moscow State Medical University, Moscow (A. Deviatkin)

Main Article

Table 2

Percentage identity between sublineages in study of evolutionary formation and distribution of Puumala virus genome variants, Russia*

Sublineage, no. sequences Volga-RUS, n = 37 W-RUS, n = 8 Balt-RUS, n = 7 East-FIN, n = 11 West-FIN, n = 15 LAT, n = 7
Volga-RUS 97.47–100, 
92.93–100 96.77–98.85 95.39–98.16 95.39–97.47 94.01–97.7 95.16–97.24
W-RUS 86.57–90.17 98.62–100, 91.17–100 97.24–98.39 96.77–97.7 94.93–97.93 96.77–97.93
Balt-RUS 85.88–88.86 85.57–88.88 97.93–100, 87.92–100 96.31–97.7 94.70–97.93 96.31–97.93
East-FIN 84.57–86.86 85.17–87.42 85.34–87.39 98.85–100, 94.24–100 96.08–99.08 97.00–97.93
West-FIN 84.27–86.87 85.03–86.77 83.86–86.73 87.02–89.55 96.54–100, 91.01–100 95.39–97.93
LAT 84.38–87.19 85.19–87.27 84.49–86.94 85.93–87.57 84.77–88.23 99.31–100, 89.77–100

*Amino acid and nucleotide identity are shown according to small (S) segment coding sequences. Gray shading indicates nucleocapsid (N) protein calculated by blastp (https://blast.ncbi.nlm.nih.gov), and S complete coding by blastn. Upper triangular matrix indicates identity values based on the complete N protein calculated using the blastp algorithm; lower triangular matrix indicates values based on the S complete coding sequence calculated using the blastn algorithm. Balt-RUS, sublineage from the Baltic coast region; East-FIN, sublineage from Siberia and Russian North; LAT, Latvian lineage; Volga-RUS, sublineage from the Volga River Valley; W-RUS, sublineage from western Russia; West-FIN, sublineage from Finland and Russian Karelia.

Main Article

Page created: May 16, 2023
Page updated: June 20, 2023
Page reviewed: June 20, 2023
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