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Volume 29, Number 9—September 2023
Dispatch

Novel Echarate Virus Variant Isolated from Patient with Febrile Illness, Chanchamayo, Peru

Gilda TroncosComments to Author , Dina Popuche, Bishwo N. Adhikari, Kyle A. Long, Jane Ríos, Michel Valerio, Carolina Guevara, Regina Z. Cer, Kimberly A. Bishop-Lilly, Julia S. Ampuero, Maria Silva, and Cristhopher D. Cruz
Author affiliations: US Naval Medical Research Unit SOUTH, Lima, Peru (G. Troncos, D. Popuche, J. Ríos, C. Guevara, J.S. Ampuero, M. Silva, C.D. Cruz); Defense Threat Reduction Agency, Fort Belvoir, Virginia, USA (B.N. Adhikari); Biological Defense Research Directorate, Naval Medical Research Command, Fort Detrick, Maryland, USA (B.N. Adhikari, K.A. Long, R.Z. Cer, K.A. Bishop-Lilly); Leidos, Reston, Virginia (K.A. Long); Hospital Regional Docente de Medicina Tropical Julio César Demarini Caro, Chanchamayo, Peru (M. Valerio); Universidad Peruana Cayetano Heredia, Lima (M. Valerio)

Main Article

Table 2

Depth and breadth of coverage based on reads mapped to references for a novel Echarate virus variant isolated from patient with febrile illness, Chanchamayo, Peru*

Segment Reference No. mapped reads Depth coverage Breadth coverage, %
Large
 Contig 111,471 8,163.64× 100
ECHV (HM119410, 6,411 bp)
 201,837
 4,777.26×
 100
Medium
 Contig 164,685 10,224.69× 100
ECHV (HM119411, 4,287 bp)
 24,756
 1,583.69×
 48
Small Contig 20,585 6,358× 100
ECHV (HM119412,1,818 bp) 24,690 3,561.94× 100

*GenBank accession numbers and sequence length for each ECHV segment are in parentheses. ECHV, Echarate virus.

Main Article

Page created: July 19, 2023
Page updated: August 20, 2023
Page reviewed: August 20, 2023
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