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Volume 30, Number 4—April 2024
Research

Crimean-Congo Hemorrhagic Fever Virus Diversity and Reassortment, Pakistan, 2017–2020

Massab Umair1Comments to Author , Zaira Rehman1, Shannon Whitmer, Melissa Mobley, Ammad Fahim, Aamer Ikram, Muhammad Salman, Joel M. Montgomery, and John D. Klena
Author affiliations: National Institutes of Health Pakistan, Islamabad, Pakistan (M. Umair, Z. Rehman, A. Ikram, M. Salman); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (S. Whitmer, M. Mobley, J.M. Montgomery, J.D. Klena); The Indus Hospital and Health Networks, Karachi, Pakistan (A. Fahim)

Main Article

Table 2

Genotypes of Crimean-Congo hemorrhagic fever viruses isolated from patients in Pakistan, 2017–2020*

Sample nos. Strain name District Province/region Collection date Genotype
GenBank accession nos.
L M S
1
NIH-PAK-CCHF-257_2017
Peshawar
Khyber Pakhtunkhwa
2017
Asia-1
Asia-1
Asia-1
OM162030–2
2
NIH-PAK-CCHF-272_2017
Peshawar
Khyber Pakhtunkhwa
2017
Asia-1
Asia-1
Asia-1
OM162033–5
3
NIH-PAK-CCHF-273_2017
Peshawar
Khyber Pakhtunkhwa
2017
Asia-1
Asia-1
Asia-1
OM162036–8
4
NIH-PAK-CCHF-274_2017
Peshawar
Khyber Pakhtunkhwa
2017
Asia-1
Asia-1
Asia-1
OM162039–41
5
NIH-PAK-CCHF-275_2017
Rawalpindi
Punjab
2017
Asia-1
Asia-1
Asia-1
OM162042–4
6
NIH-PAK-CCHF-104_2018
Khyber Agency
Khyber Pakhtunkhwa
2018
Asia-1
Asia-1
Asia-1
OM162096–8
7
NIH-PAK-CCHF-86_2018
Rawalpindi
Punjab
2018
Asia-1
Asia-1
Asia-1
OM162099–101
8
NIH-PAK-CCHF-84_2018
Islamabad
Islamabad
2018
Asia-1
Asia-2
Asia-2
OM162102–4
9
NIH-PAK-CCHF-119_2018
Islamabad
Islamabad
2018
Asia-1
Asia-1
Asia-1
OM162105–7
10
NIH-PAK-CCHF-65_2018
Multan
Punjab
2018
Asia-1
Asia-1
Asia-1
OM162108–10
11
NIH-PAK-CCHF-73_2018
Multan
Punjab
2018
Asia-1
NA
Asia-1
OM162111–2
12
NIH-PAK-CCHF-56_2018
Chakwal
Punjab
2018
Asia-1
Asia-1
Asia-1
OM162113–5
13
NIH-PAK-CCHF-43_2018
Rawalpindi
Punjab
2018
Asia-1
Asia-1
Asia-2
OM162116–8
14
NIH-PAK-CCHF-44_2018
Mianwali
Punjab
2018
Asia-1
Asia-1
Asia-1
OM162119–21
15
NIH-PAK-CCHF-19_2018
Multan
Punjab
2018
Asia-1
Asia-1
Asia-1
OM162122–4
16
NIH-PAK-CCHF-18_2019
Rawalpindi
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162027–9
17
NIH-PAK-CCHF-20_2019
Jamshoro
Sindh
2019
Asia-1
Asia-2
Asia-1
OM162045–7
18
NIH-PAK-CCHF-27_2019
Lodhran
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162048–50
19
NIH-PAK-CCHF-28_2019
DG Khan
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162051–3
20
NIH-PAK-CCHF-80_2019
Rawalpindi
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162054–6
21
NIH-PAK-CCHF-61_2019
Peshawar
Khyber Pakhtunkhwa
2019
Asia-1
Asia-1
Asia-1
OM162057–9
22
NIH-PAK-CCHF-65_2019
Gujrat
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162060–2
23
NIH-PAK-CCHF-97_2019
Karachi
Sindh
2019
Asia-1
Asia-1
Asia-1
OM162063–5
24
NIH-PAK-CCHF-86_2019
Rawalpindi
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162066–8
25
NIH-PAK-CCHF-95_2019
Lahore
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162069–71
26
NIH-PAK-CCHF-156_2019
Chakwal
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162072–4
27
NIH-PAK-CCHF-92_2019
DG Khan
Punjab
2019
NA
NA
Asia-1
OM162075
28
NIH-PAK-CCHF-159_2019
Bahawalpur
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162076–8
29
NIH-PAK-CCHF-168_2019
Islamabad
Islamabad
2019
Asia-1
Asia-1
Asia-1
OM162079–81
30
NIH-PAK-CCHF-190_2019
Haripur
Khyber Pakhtunkhwa
2019
Asia-1
Asia-1
Asia-1
OM162082–4
31
NIH-PAK-CCHF-222_2019
Rawalpindi
Punjab
2019
Asia-1
Asia-1
Asia-1
OM162085–7
32
NIH-PAK-CCHF-233_2019
Rawalpindi
Punjab
2019
Asia-1
Africa-2
Asia-1
OM162088–90
33
NIH-PAK-CCHF-279_2019
Islamabad
Islamabad
2019
Asia-1
NA
Asia-2
OM162091–2
34
NIH-PAK-CCHF-14_2019
Karachi
Sindh
2019
Asia-1
Asia-1
Asia-1
OM162093–5
35
NIH-PAK-CCHF-509_2020
Rawalpindi
Punjab
2020
Asia-1
Asia-1
Asia-1
OM162125–7
36 NIH-PAK-CCHF-510_2020 Peshawar Khyber Pakhtunkhwa 2020 Asia-1 Asia-1 Asia-1 OM162128–30

*Genotypes were determined by whole-genome sequencing of L, M, and S virus segments. L, large; M, medium; NA, not applicable; S, small.

Main Article

1These authors contributed equally to this article.

Page created: January 31, 2024
Page updated: March 20, 2024
Page reviewed: March 20, 2024
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