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Volume 31, Supplement—May 2025
SUPPLEMENT ISSUE
Supplement

Genomic Modeling of an Outbreak of Multidrug-Resistant Shigella sonnei, California, USA, 2023–2024

Tyler Lloyd1, Sana M. Khan1, Dustin Heaton, Munira Shemsu, Vici Varghese, Jay Graham, Misha Gregory, Penny Dorfman, Megan Talton, Jessica DeVol, Kavita K. Trivedi2, and Nicola F. Müller2Comments to Author 
Author affiliation: Alameda County Public Health Department, San Leandro, California, USA (T. Lloyd, S.M. Khan, D. Heaton, M. Shemsu, V. Varghese, M. Gregory, P. Dorfman, M. Talton, J. DeVol, K.K. Trivedi); University of California, Berkeley, California, USA (T. Lloyd, J. Graham); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (S.M. Khan); University of California, San Francisco, California, USA (N.F. Müller)

Main Article

Figure 5

Phylogenetic tree of Shigella sonnei outbreak isolates in the San Francisco Bay, California, USA, area with spatiotemporal metadata and tree uncertainty, 2023–2024. Branches are colored according to location. The opacity of the branches is equal to the uncertainty of the placement of each branch. Phylodynamic methods are incorporated into phylogenetic trees with time and location.

Figure 5. Phylogenetic tree of Shigella sonnei outbreak isolates in the San Francisco Bay, California, USA, area with spatiotemporal metadata and tree uncertainty, 2023–2024. Branches are colored according to location. The opacity of the branches is equal to the uncertainty of the placement of each branch. Phylodynamic methods are incorporated into phylogenetic trees with time and location.

Main Article

1These first authors contributed equally to this article.

2These senior authors contributed equally to this article.

Page created: March 18, 2025
Page updated: May 06, 2025
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