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Community-Scale Surveillance of SARS-CoV-2 and Influenza A Viruses in Wild Mammals, United States, 2022–2023
Grete Wilson-Henjum

, J. Jeffrey Root, Alex Worgo, Jeffrey Chandler, Robin Dyer, Jeff Flores, Jesse Morris, Ian Plummer, John Paul Seman, Kyle Van Why, Caleb Wellman, H. Bryant White, John Wilt, Diego Diel, Jon Heale, David L. Bergman, Josh Hewitt, Derek Collins, Ryan S. Miller, Steven Rekant, and Kim M. Pepin
Author affiliation: Utah State University S.J. and Jessie E. Quinney College of Natural Resources, Logan, Utah, USA (G. Wilson-Henjum, J. Hewitt); US Department of Agriculture Animal and Plant Health Inspection Service (APHIS) Wildlife Services, National Wildlife Research Center, Fort Collins, Colorado, USA (J.J. Root, A. Worgo, K.M. Pepin); US Department of Agriculture APHIS, Wildlife Disease Diagnostic Laboratory, Fort Collins (J. Chandler); US Department of Agriculture APHIS Wildlife Services, Augusta, Maine, USA (R. Dyer, J. Morris); US Department of Agriculture APHIS Wildlife Services, Sacramento, California, USA (J. Flores); US Department of Agriculture APHIS Wildlife Services, Portland, Oregon, USA (I. Plummer); US Department of Agriculture APHIS Wildlife Services, Sandusky, Ohio, USA (J.P. Seman, C. Wellman); Association of Fish and Wildlife Agencies, Phoenix, Arizona, USA (H.B. White); US Department of Agriculture APHIS Wildlife Services, Harrisburg, Pennsylvania, USA (K. Van Why, J. Wilt); Cornell University, Ithaca, New York, USA (D. Diel); US Department of Agriculture APHIS Wildlife Services, San Tan Valley, Arizona, USA (J. Heale); US Department of Agriculture APHIS Wildlife Services, Phoenix, Arizona, USA (D.L. Bergman); US Department of Agriculture APHIS Wildlife Services, National Wildlife Disease Program, Fort Collins (D. Collins); Centers for Epidemiology and Animal Health, Fort Collins (R.S. Miller); US Department of Agriculture Veterinary Services, Riverdale, Maryland, USA (S. Rekant)
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Figure 4

Figure 4. Posterior estimates of disease freedom varied based on prior input and the number of samples collected from each species in March 2023 in study of SARS-CoV-2 and influenza A viruses in wild mammals, United States. Collecting larger sample sizes enabled posterior estimates to depend less on prior inputs. The probability of disease freedom was analyzed for SARS-CoV-2–negative swabs from each species within each site. Probabilities for 8 species at a site in Iowa, United States, are shown.
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