Volume 4, Number 2—June 1998
Dispatch
Molecular and Epidemiologic Analysis of Dengue Virus Isolates from Somalia
Niranjan Kanesa-thasan*
, Gwong-Jen J. Chang†, Bonnie L. Smoak*, Alan Magill*, M. Jeanne Burrous*, and Charles H. Hoke*
, Gwong-Jen J. Chang†, Bonnie L. Smoak*, Alan Magill*, M. Jeanne Burrous*, and Charles H. Hoke*
Table 2
Nucleotide sequences at the E-639 to 1233 region of Somalia dengue-2 isolates
| E gene position nt/aaa | SOM 1984b nt/aa | Patientc | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11 |
13 |
02 |
12 |
21 |
20 |
23 |
30 |
39 |
46 |
56 |
57 |
58 |
||
| 654/218 | uuA/Leu | G | G | |||||||||||
| 661/221 | Cug/Leu | U | U | |||||||||||
| 720/240 | uuC/Phe | U | ||||||||||||
| 723/241 | aaA.Lys | G | G | |||||||||||
| 729/243 | ccU/Pro | C | ||||||||||||
| 783/261 | caU/His | C | C | |||||||||||
| 792/264 | cuC/Leu | U | U | U | U | U | U | U | U | U | U | U | U | U |
| 801/267 | gcC/Ala | U | U | |||||||||||
| 870/290 | gaC/Asp | U | ||||||||||||
| 871/291 | Caa/Gln →Lys | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 885/295 | aaA/Lys | G | G | G | G | G | G | G | G | G | G | G | G | G |
| 900/300 | UCu/Ser | A | A | A | A | |||||||||
| 972/324 | guA/Val | G | G | |||||||||||
| 1,050/350 | cgC/Arg | U | ||||||||||||
| 1,056/352 | auU/Ile | C | C | A | A | A | A | |||||||
| 1,074/358 | guU/Val | C | C | C | C | C | C | C | C | C | C | C | C | C |
| 1,079/360 | gAa/Glu →Gly | G | G | |||||||||||
| 1,082/361 | aAa/Lys →Arg | G | ||||||||||||
| 1,104/368 | gaA/Glu | G | G | |||||||||||
| 1,137/379 | auC/Ili | U | U | U | U | U | U | U | U | U | U | U | U | U |
| 1,161/387 | cuG/Leu | A | A | A | A | A | A | A | A | A | A | A | A | A |
| 1,167/389 | cuC/Leu | U | U | U | U | U | U | U | ||||||
| 1,209/403 | gaG/Glu | A | ||||||||||||
| 1,225/409 | Gcg/Ala →Pro | C | ||||||||||||
ant/aa = nucleotide/amino acid.
bSomalia 1984 dengue-2 virus.
cCapital letter (A, U, G, C) = different nucleotide sequence; empty cell indicates identical nucleotide sequence.
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