Skip directly to site content Skip directly to page options Skip directly to A-Z link Skip directly to A-Z link Skip directly to A-Z link
Volume 4, Number 3—September 1998

Molecular Analysis of Salmonella paratyphi A From an Outbreak in New Delhi, India

On This Page
Article Metrics
citations of this article
EID Journal Metrics on Scopus

Cite This Article

To the Editor: In the context of emerging infectious diseases, enteric fever caused by Salmonella paratyphi A deserves increased attention and vigilance, although its severity is often milder than that of S. typhi disease. Outbreaks associated with this organism are exceedingly rare but have recently been reported in India (1) and Thailand. In India, the first reported outbreak of disease associated with S. paratyphi A (1) provided an opportunity to study the molecular epidemiology of infection caused by this organism.

A total of 18 human blood isolates of S. paratyphi A, 13 from the outbreak in New Delhi, India (from September to October 1996) (1) and 5 sporadic isolates from cases unrelated to the outbreak, were used in this study. A total of 36 culture-positive cases were detected during the 6-week outbreak. All strains were phage type 1 and were sensitive to all antibiotics tested. Isolates were analyzed by ribotyping and pulsed-field gel electrophoresis (PFGE) (2,3). PFGE/ribotype profiles were assigned arbitrary designations and analyzed by defining a similarity (Dice) coefficient, F (3), where F = 1.0 indicates complete pattern identity and F = 0, complete dissimilarity.

The five sporadic isolates of S. paratyphi A gave PFGE patterns following XbaI (5'-TCTAGA-3') digestion that were unique and distinctly different, with differences of 8 to 12 bands (F = 0.63-0.70). In contrast, the 13 outbreak isolates shared only four closely related PFGE patterns differing only in 1 to 6 bands (F = 0.8-1.0). Among the outbreak strains, two distinct clones were observed, X1 and X2, which differed by 5 to 6 bands. Furthermore, outbreak isolates X3 and X4 were closely related to X1, differing by four and three DNA fragments, respectively. Similar results were obtained after digestion with a second restriction endonuclease, SpeI (5'-ACTAGT-3'; pattern designation S). Although fewer bands were seen compared to PFGE, ribotyping of these isolates using SpeI-digested genomic DNA largely confirmed the PFGE results in that the sporadic isolates gave unique profiles and only three closely related ribotype profiles were detected among the outbreak isolates. Two Malaysian isolates of S. paratyphi A included for comparison gave patterns very different from the Indian isolates by both PFGE (F = 0.44-0.65) and ribotyping. Also, it was determined that isolates A-117 (X1/S1) and A-123 (X2/S2) belonged to the index cases and that, as the outbreak progressed, other patterns (X3/S3 and X4/S4), which differed from the original patterns by one to four bands, appeared during weeks 2 to 3 of the outbreak. Notably, patterns X1 and X2 reappeared at the end of the outbreak.

Although molecular analysis of S. typhi and S. paratyphi B by ribotyping (2,4) and PFGE (3) has been reported, to the best of our knowledge the present study is the first performed with S. paratyphi A. The data obtained agree with those observed for S. typhi (3) in that outbreak isolates are more clonal and limited in diversity, whereas sporadic isolates are more diverse genetically and belong to unrelated clones. According to the criteria of Tenover et al. (5), it seems likely that the present outbreak was associated with two distinct clones/strains of S. paratyphi A (X1/S1 and X2/S2) that are related (5) but have distinct PFGE profiles. This observation is perhaps not surprising given the fact that both clones are phage type 1 and that contaminated potable water was incriminated in the outbreak (1). The PFGE results were largely confirmed by ribotyping, although this technique appears to be slightly less sensitive and discriminating in that fewer bands were seen and the differences between outbreak isolates were much less obvious.

We thus conclude that the outbreak in New Delhi, India, was caused by two related but distinct clones of S. paratyphi A. There also appears to be substantial genetic diversity among S. paratyphi A strains as the Malaysian isolates were very different from those from India. The data also suggested minor genetic changes among the S. paratyphi A isolates during the 2-month outbreak. This observation agrees with the high mutation rates noted among pathogenic Salmonella spp. (6) and the plasticity of the genome of salmonellae associated with enteric fever (7). How these changes affected the biologic behavior of these isolates will be the subject of further study. Our study reaffirms the usefulness of PFGE and ribotyping in the molecular typing and discrimination of individual Salmonella isolates for epidemiologic investigations.


Kwai-Lin Thong*, Satheesh Nair*, Rama Chaudhry†, Pradeep Seth†, Arti Kapil†, Dinesh Kumar†, Hema Kapoor‡, Savithri Puthucheary*, and Tikki Pang*
Author affiliations: *University of Malaya, Kuala Lumpur, Malaysia; †All India Institute of Medical Sciences, New Delhi, India; ‡Safdarjang Hospital, New Delhi, India



  1. Kapil  A, Sood  S, Reddaiah  VP, Das  B, Seth  P. Paratyphoid fever due to Salmonella enterica serotype paratyphi A. Emerg Infect Dis. 1997;3:407. DOIPubMedGoogle Scholar
  2. Pang  T, Altwegg  M, Martinetti  G, Koh  CL, Puthucheary  SD. Genetic variation among Malaysian isolates of Salmonella typhi as detected by ribosomal RNA gene restriction patterns. Microbiol Immunol. 1992;36:53943.PubMedGoogle Scholar
  3. Thong  KL, Cheong  YM, Puthucheary  S, Koh  CL, Pang  T. Epidemiologic analysis of sporadic and outbreak Salmonella typhi isolates by pulsed field gel electrophoresis. J Clin Microbiol. 1994;32:113541.PubMedGoogle Scholar
  4. Ezquerra  E, Burnens  A, Jones  C, Stanley  J. Genotypic typing and phylogenetic analysis of Salmonella paratyphi B and S. java with IS200. J Gen Microbiol. 1993;139:240914.PubMedGoogle Scholar
  5. Tenover  FC, Arbeit  RD, Goering  RV, Mickelson  PA, Murray  BE, Persing  DH, Interpreting chromosomal DNA restriction patterns produced by pulsed field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol. 1995;33:22339.PubMedGoogle Scholar
  6. Leclerc  JE, Li  B, Payne  WL, Cebula  TA. High mutation frequencies among Escherichia coli and Salmonella pathogens. Science. 1996;274:120811. DOIPubMedGoogle Scholar
  7. Liu  SL, Sanderson  KE. Highly plastic chromosomal organization in Salmonella typhi. Proc Natl Acad Sci U S A. 1996;93:103038. DOIPubMedGoogle Scholar


Cite This Article

DOI: 10.3201/eid0403.980348

Related Links


Table of Contents – Volume 4, Number 3—September 1998

Page created: December 15, 2010
Page updated: December 15, 2010
Page reviewed: December 15, 2010
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.