Volume 7, Number 1—February 2001
Dispatch
Rapid Identification of Corynebacterium diphtheriae Clonal Group Associated with Diphtheria Epidemic, Russian Federation
Table
RAPD | ||||
---|---|---|---|---|
Ribotype | Biotype | No. of strains | Primer 3 | Primer 4 |
G1 | G | 38 | G1/4 | G1/4 |
M | 2 | G1/4 | G1/4 | |
G4 | G | 25 | G1/4 | G1/4 |
M | 1 | G1/4 | G1/4 | |
G | 1 | Newc | G1/4 | |
G4v | G | 1 | G4v | G4v |
M1 | M | 5 | M1/1v | M1/1v |
M1v | M | 5 | M1/1v | M1/1v |
New | M | 1 | New | New |
aG, biotype gravis; M, biotype mitis. Cultures were kept lyophilized at room temperature or were stored in defibrinated sheep blood and held at -70°C until needed. Before use, the strains were inoculated onto blood agar plates (trypticase soy agar with 5% sheep blood; Becton Dickinson, Cockeysville, MD) and were incubated at 37°C overnight.
bDNA for ribotyping was isolated by the universal isolation procedure (5). Hybridization of restricted DNA fragments was performed using a mixture of five digoxigenin-labeled oligonucleotide probes at 37°C for 4 hours as recently described by Regnault et al. (6). Posthybridization washes were also performed at 37°C in 2X SSC (1 X SSC is 0.15 M NaCl plus 0.015 M sodium citrate), 0.1% sodium dodecyl sulfate (SDS) for 2x5 minutes and in 0.1X SSC, 0.1% SDS for 2x10 minutes. Detection was performed by using the DIG Wash and Block Buffer Set (Boehringer Mannheim Biochemicals, Indianapolis, IN), sheep anti-digoxigenin antibody conjugated with alkaline phosphatase, nitroblue tetrazolium chloride (NBT), and 5-bromo-4-chloro-3-indolylphosphate (BCIP).
cNew = pattern has not been previously observed.
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