Volume 8, Number 11—November 2002
THEME ISSUE
Tuberculosis Genotyping
Tuberculosis Genotyping Network, United States
National Tuberculosis Genotyping and Surveillance Network: Analysis of the Genotype Database
Lauren S. Cowan* and Jack T. Crawford*
Table 5
Distribution of isolates with spoligotypes reported with high frequencya,b
| No. isolates/site |
No. isolates/IS6110 copy number |
|||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SP | Octal codec | No. isolates | AR | CA | MA | MD | MI | NJ | TX | 1 | 2 | 3 | 4 | 5 | 6 | No. fingerprint patternsd |
| 2 | 777777777760771 | 84 | 8 | 25 | 10 | 2 | 8 | 14 | 17 | 40 | 11 | 5 | 15 | 3 | 10 | 30 |
| 3 | 777776777760771 | 331 | 16 | 57 | 16 | 3 | 40 | 48 | 151 | 5 | 82 | 25 | 122 | 61 | 36 | 77 |
| 9 | 777776777760601 | 288 | 20 | 35 | 18 | 3 | 89 | 51 | 72 | 3 | 190 | 72 | 17 | 6 | 0 | 44 |
| 15 | 777777777413771 | 50 | 0 | 19 | 11 | 2 | 5 | 3 | 10 | 26 | 6 | 3 | 7 | 4 | 4 | 21 |
| 16 | 777777777416761 | 21 | 0 | 0 | 16 | 0 | 0 | 2 | 3 | 10 | 2 | 0 | 2 | 6 | 1 | 10 |
| 19 | 777777774413771 | 99 | 0 | 69 | 18 | 0 | 7 | 4 | 1 | 83 | 5 | 6 | 3 | 1 | 1 | 17 |
| 27 | 701776777760601 | 131 | 0 | 130 | 1 | 0 | 0 | 0 | 0 | 0 | 129 | 1 | 0 | 1 | 0 | 4 |
| 28 | 700036777760771 | 34 | 0 | 4 | 7 | 1 | 2 | 18 | 2 | 1 | 6 | 19 | 0 | 8 | 0 | 12 |
| 29 | 700076777760771 | 46 | 2 | 7 | 5 | 1 | 7 | 13 | 11 | 0 | 0 | 0 | 27 | 11 | 8 | 13 |
| 30 | 700036777760731 | 44 | 0 | 3 | 3 | 0 | 10 | 16 | 12 | 0 | 2 | 42 | 0 | 0 | 0 | 4 |
| 72 | 700076777760671 | 38 | 4 | 2 | 2 | 0 | 13 | 14 | 3 | 0 | 0 | 0 | 28 | 9 | 1 | 7 |
| 75 | 777776407760601 | 57 | 0 | 1 | 0 | 0 | 0 | 55 | 1 | 41 | 14 | 2 | 0 | 0 | 0 | 4 |
| 91 | 477777777741071 | 24 | 0 | 0 | 1 | 0 | 0 | 23 | 0 | 18 | 3 | 0 | 0 | 1 | 2 | 8 |
| 300 | 777756777760601 | 41 | 0 | 0 | 1 | 38 | 2 | 0 | 0 | 0 | 4 | 9 | 14 | 0 | 14 | 9 |
| 540 | 477777777413071 | 44 | 1 | 17 | 5 | 9 | 10 | 1 | 1 | 25 | 4 | 5 | 3 | 1 | 6 | 21 |
| 545 | 037776777760601 | 31 | 0 | 0 | 0 | 0 | 30 | 0 | 1 | 0 | 30 | 1 | 0 | 0 | 0 | 2 |
| 546 | 777777777413731 | 26 | 0 | 17 | 0 | 3 | 4 | 0 | 2 | 20 | 3 | 0 | 2 | 0 | 1 | 7 |
| 560 | 777777777760601 | 20 | 8 | 0 | 0 | 0 | 0 | 0 | 12 | 0 | 17 | 2 | 1 | 0 | 0 | 4 |
| 562 | 777777776413771 | 21 | 4 | 0 | 0 | 0 | 0 | 0 | 17 | 18 | 2 | 1 | 0 | 0 | 0 | 4 |
| 900 | 776377777740731 | 51 | 0 | 0 | 0 | 51 | 0 | 0 | 0 | 0 | 36 | 11 | 2 | 0 | 2 | 11 |
aAR, Arkansas, CA, California; MA, Massachusetts; MD, Maryland; MI, Michigan; NJ, New Jersey, TX, Texas.
bSpoligotypes reported for ≥ 20 isolates.
cThe 43-digit spoligotype pattern is reported in the standard octal code format (2).
dNumber of different fingerprint patterns reported for isolates with this spoligotype.
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Page updated: July 19, 2010
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