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Volume 8, Number 11—November 2002
THEME ISSUE
Tuberculosis Genotyping
Tuberculosis Genotyping Network, United States

National Tuberculosis Genotyping and Surveillance Network: Analysis of the Genotype Database

Lauren S. Cowan* and Jack T. Crawford*Comments to Author 
Author affiliations: *Centers for Disease Control and Prevention, Atlanta, Georgia, USA;

Main Article

Table 5

Distribution of isolates with spoligotypes reported with high frequencya,b

No. isolates/site
No. isolates/IS6110 copy number
SP Octal codec No. isolates AR CA MA MD MI NJ TX 1 2 3 4 5 6 No. fingerprint patternsd
2 777777777760771 84 8 25 10 2 8 14 17 40 11 5 15 3 10 30
3 777776777760771 331 16 57 16 3 40 48 151 5 82 25 122 61 36 77
9 777776777760601 288 20 35 18 3 89 51 72 3 190 72 17 6 0 44
15 777777777413771 50 0 19 11 2 5 3 10 26 6 3 7 4 4 21
16 777777777416761 21 0 0 16 0 0 2 3 10 2 0 2 6 1 10
19 777777774413771 99 0 69 18 0 7 4 1 83 5 6 3 1 1 17
27 701776777760601 131 0 130 1 0 0 0 0 0 129 1 0 1 0 4
28 700036777760771 34 0 4 7 1 2 18 2 1 6 19 0 8 0 12
29 700076777760771 46 2 7 5 1 7 13 11 0 0 0 27 11 8 13
30 700036777760731 44 0 3 3 0 10 16 12 0 2 42 0 0 0 4
72 700076777760671 38 4 2 2 0 13 14 3 0 0 0 28 9 1 7
75 777776407760601 57 0 1 0 0 0 55 1 41 14 2 0 0 0 4
91 477777777741071 24 0 0 1 0 0 23 0 18 3 0 0 1 2 8
300 777756777760601 41 0 0 1 38 2 0 0 0 4 9 14 0 14 9
540 477777777413071 44 1 17 5 9 10 1 1 25 4 5 3 1 6 21
545 037776777760601 31 0 0 0 0 30 0 1 0 30 1 0 0 0 2
546 777777777413731 26 0 17 0 3 4 0 2 20 3 0 2 0 1 7
560 777777777760601 20 8 0 0 0 0 0 12 0 17 2 1 0 0 4
562 777777776413771 21 4 0 0 0 0 0 17 18 2 1 0 0 0 4
900 776377777740731 51 0 0 0 51 0 0 0 0 36 11 2 0 2 11

aAR, Arkansas, CA, California; MA, Massachusetts; MD, Maryland; MI, Michigan; NJ, New Jersey, TX, Texas.
bSpoligotypes reported for ≥ 20 isolates.
cThe 43-digit spoligotype pattern is reported in the standard octal code format (2).
dNumber of different fingerprint patterns reported for isolates with this spoligotype.

Main Article

Page created: July 19, 2010
Page updated: July 19, 2010
Page reviewed: July 19, 2010
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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