Volume 10, Number 12—December 2004
Dispatch
Isolation and Molecular Identification of Nipah Virus from Pigs
Sazaly AbuBakar*
, Li-Yen Chang*, A.R. Mohd Ali†, S.H. Sharifah†, Khatijah Yusoff‡, and Zulkeflie Zamrod§
, Li-Yen Chang*, A.R. Mohd Ali†, S.H. Sharifah†, Khatijah Yusoff‡, and Zulkeflie Zamrod§
Table A1
Comparisons of the genome sequences of Nipah virus isolatesa
| Gene: |
N |
P |
M |
F |
G |
L |
||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NV isolate | Nucleotide position |
|||||||||||||||||||||||||||||||||||||
| 89 | 617 | 820 | 828 | 910 | 1132 | 2124 | 312 | 439 | 495 | 523 | 567 | 749 | 951 | 1017 | 1043 | 59 | 264 | 306 | 450 | 543 | 814 | 9 | 117 | 153 | 668 | 2226 | 2541 | 2704 | 3657 | 4714 | 4749 | 4934 | 5257 | 5268 | 6115 | 6486 | 6609 | |
| CDC | c | c | a | c | a | g | t | a | a | t | c | g | c | g | c | t | t | g | c | g | a | a | t | g | g | c | g | c | c | a | c | c | c | a | c | c | a | g |
| UMMC1 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | t | . | . | . | . | . |
| UMMC2 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | t | . | . | . | . | . | . |
| NV-Flying Fox | t | t | . | . | . | . | . | . | . | . | . | . | . | . | . | c | . | . | t | a | . | . | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| UM-0128 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | a | . | . | . | . | . | . | . | . | . | . | t | . | t | . | . | . | . | . |
| NV-Tambun | . | . | c | t | g | a | c | g | g | c | t | a | t | a | . | . | a | a | . | . | g | g | c | a | . | a | a | t | . | g | . | . | t | g | t | a | g | a |
| NV-Seremban | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | t | . | . | . | . | . | . | . | . | . |
| NV-Sungai Buloh | . | . | . | . | . | . | . | . | . | . | . | . | . | . | t | . | . | . | . | a | . | . | . | . | . | . | . | . | . | . | . | . | t | . | . | . | . | . |
aResults shown are a summary of all the nucleotides (a) and its corresponding deduced amino acids (b) differences in the NV gene coding regions and nucleotides differences in the NV noncoding regions (c) of the NV-Tambun, NV-Seremban, NV-Sungai Buloh, and UM-0128 in comparison to other known NV isolates.
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