Volume 10, Number 12—December 2004
Dispatch
Novel Avian Influenza H7N3 Strain Outbreak, British Columbia
Martin Hirst*, Caroline R. Astell*
, Malachi Griffith*, Shaun M. Coughlin*, Michelle Moksa*, Thomas Zeng*, Duane E. Smailus*, Robert A. Holt*, Steven Jones*, Marco A. Marra*, Martin Petric†, Mel Krajden†, David Lawrence†, Annie Mak†, Ron Chow†, Danuta M. Skowronski†, S. Aleina Tweed†, SweeHan Goh†, Robert C. Brunham†, John Robinson‡, Victoria Bowes‡, Ken Sojonky‡, Sean K. Byrne‡, Yan Li§, Darwyn Kobasa§, Tim Booth§, and Mark Paetzel¶
, Malachi Griffith*, Shaun M. Coughlin*, Michelle Moksa*, Thomas Zeng*, Duane E. Smailus*, Robert A. Holt*, Steven Jones*, Marco A. Marra*, Martin Petric†, Mel Krajden†, David Lawrence†, Annie Mak†, Ron Chow†, Danuta M. Skowronski†, S. Aleina Tweed†, SweeHan Goh†, Robert C. Brunham†, John Robinson‡, Victoria Bowes‡, Ken Sojonky‡, Sean K. Byrne‡, Yan Li§, Darwyn Kobasa§, Tim Booth§, and Mark Paetzel¶
Table A1
Comparison of individual gene segments of four isolates of the Fraser Valley H7N3 outbreak in 2004 with full length influenza genes from GenBank showing the highest similaritya
| Query accession no. | Isolate name | Length (bp) | BLASTN identity (%) | Accession no. and isolate name | BLASTP identity (%) | Accession no. and isolate name |
|---|---|---|---|---|---|---|
| AY650270 | A/Chicken/Canada/AVFV1/04 HA | 1,733 | 95 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 97 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY648287 | A/Chicken/Canada/AVFV2/04 HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY611524 | A/Canada/444/04 (human) HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY646078 | A/Canada/504/04 (human) HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY650271 | A/Chicken/Canada/AVFV1/04 M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 A/Turkey/Minnesota/833/80 (H4N2) |
| 100 (M2) | AAQ77433 A/Chicken/Chile/176822/02 (H7N3) | |||||
| AY648288 | A/Chicken/Canada/AVFV2/04 M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY611525 | A/Canada/444/04 (human) M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY646079 | A/Canada/504/04 (human) M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY650272 | A/Chicken/Canada/AVFV1/04 NA | 1,453 | 97 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | AAP57563 A/blue-winged teal/TX/2/01 (H7N3) |
| AY648289 | A/Chicken/Canada/AVFV2/04 NA | 1,453 | 98 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | " |
| AY611526 | A/Canada/444/04 (human) NA | 1,453 | 97 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 97 | " |
| AY646080 | A/Canada/504/04 (human) NA | 1,453 | 98 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | " |
| AY650273 | A/Chicken/Canada/AVFV1/04 NP | 1,565 | 95 | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 100 | AAG17432 A/Swine/Ontario/)1911-1/99 (H4N6) |
| AY648290 | A/Chicken/Canada/AVFV2/04 NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY611527 | A/Canada/444/04 (human) NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY646081 | A/Canada/504/04 (human) NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY650274 | A/Chicken/Canada/AVFV1/04 NS | 890 | 98% | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 A/Anas acuta/Primrje/695/76 (H3N2) |
| 99 (NS2) | AAK14369 A/Brevig-Mission/1/18 (H1N1) | |||||
| AY648291 | A/Chicken/Canada/AVFV2/04 NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| 99 (NS2) | AAK14369 | |||||
| AY611528 | A/Canada/444/04 (human) NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| 99 (NS2) | AAK14369 | |||||
| AY646082 | A/Canada/504/04 (human) NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| AY650275 | A/Chicken/Canada/AVFV1/04 PA | 2,230 | 94 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY648292 | A/Chicken/Canada/AVFV2/04 PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY616764 | A/Canada/444/04 (human) PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY646083 | A/Canada/504/04 (human) PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY653039 | A/Chicken/Canada/AVFV1/04 PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY648293 | A/Chicken/Canada/AVFV2/04 PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY616765 | A/Canada/444/04 (human) PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 98 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY646084 | A/Canada/504/04 (human) PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY650276 | A/Chicken/Canada/AVFV1/04 PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY648294 | A/Chicken/Canada/AVFV2/04 PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY616766 | A/Canada/444/04 (human) PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY646085 | A/Canada/504/04 (human) PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
aQuery accession no., isolate name and length (bp); GenBank accession no., isolate name, and nucleotide length for each gene segment, respectively; BLASTN identity, percentage of identical nucleotides as assigned by BLASTN; accession no., GenBank nucleotide accession no., and isolate name; BLASTP identity, percentage of identical nucleotides as assigned by BLASTP; accession no., GenBank protein accession no., and isolate name.
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