Volume 11, Number 5—May 2005
Research
Low Diversity of Alkhurma Hemorrhagic Fever Virus, Saudi Arabia, 1994–1999
Rémi N. Charrel*
, Ali Mohamed Zaki†, Mazen Fakeeh†, Amany Ibrahim Yousef†, Reine de Chesse*, Houssam Attoui*, and Xavier de Lamballerie*
, Ali Mohamed Zaki†, Mazen Fakeeh†, Amany Ibrahim Yousef†, Reine de Chesse*, Houssam Attoui*, and Xavier de Lamballerie*
Table 3
Mutated positions in the sequences of the 11 AHFV isolates included in the study*
| Position/gene† | Coding sequence | Strain |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 228 | 87 | mos | 1176 | 1209 | 5975 | 7471 | 7466 | 7344 | 7586 | 9518 | ||
| E | ||||||||||||
| 480 | 1323 | A | A | A | A | A | A | A | G | A | A | A |
| 513 | 1356 | G | G | G | G | G | G | G | A | G | G | G |
| 579 | 1422 | T | T | T | T | T | T | T | T | T | T | C |
| 1062 | 1905 | A | A | A | A | A | G | A | A | A | A | A |
| NS3 | ||||||||||||
| 600 | 1323 | C | C | C | C | C | C | C | T | C | C | C |
| 687 | 1356 | T | T | T | T | T | T | T | T | C | C | T |
| 714 | 1422 | G | G | G | G | G | G | G | G | A | G | G |
| 600 | 1905 | T | T | T | T | T | C | T | T | T | T | T |
| 687 | 1323 | C | C | C | C | C | C | T | C | C | T | C |
| 714 | 1356 | A | A | A | A | G | A | A | A | A | A | A |
| 600 | 1422 | T | T | T | T | T | C | T | T | T | T | T |
| 687 | 1905 | A | A | A | A | A | A | G | A | A | A | A |
| NS5 | ||||||||||||
| 1079 | 1323 | G | G | G | G | C | G | G | G | G | G | G |
| 687 | 1356 | C | C | C | C | C | C | C | C | C | T | C |
| 714 | 1422 | T | T | C | T | T | T | T | T | T | T | T |
| 600 | 1905 | C | C | C | C | C | C | C | C | T | C | C |
| 687 | 1323 | A | A | A | A | A | A | A | A | A | A | G |
| 714 | 1356 | G | G | G | G | A | A | A | G | G | A | A |
| 600 | 1422 | T | T | T | T | T | T | T | T | T | T | C |
| 2096 | 1905 | A | A | A | A | T | T | T | A | A | T | T |
| 2244 | 9783 | C | C | C | C | T | C | C | C | C | C | C |
*AHFV, Alkhurma hemorrhagic fever virus.
†By reference to the nucleotide sequence of AHFV prototype strain deposited in GenBank under accession number AF331718; shaded cell indicates mutated position; underlined nucleotides indicate nonsynonymous mutations.
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