Volume 18, Number 10—October 2012
Dispatch
Schmallenberg Virus as Possible Ancestor of Shamonda Virus
Table 2
Pairwise comparison of full N, M, and L gene sequences of SBV with other orthobunyaviruses*
| Species | SBV |
Shamonda virus
|
|
Sathuperi virus
|
|
Akabane virus
|
|
Shuni virus
|
|
Simbu virus
|
|||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SHAV | PEAV | SANV | SATV | DOUV | AKAV | SABOV | SHUV | AINOV | SIMV | ||||||
| Small segment | |||||||||||||||
|
SHAV |
97.7 (100.0) | ||||||||||||||
|
PEAV |
77.2 (80.6) | 77.5 (80.6) | |||||||||||||
|
SANV |
78.2 (80.6) | 77.3 (80.6) | 92.5 (100) | ||||||||||||
|
SATV |
93.1 (99.5) | 92.9 (99.5) | 77.6 (81.1) | 78.1 (81.1) | |||||||||||
|
DOUV |
92.2 (99.1) | 92.9 (99.1) | 77.8 (81.1) | 78.3 (81.1) | 92.9 (99.5) | ||||||||||
|
AKAV |
77.2 (79.8) | 77.3 (79.8) | 76.8 (82.8) | 77.6 (82.8) | 78.6 (80.2) | 78.2 (80.2) | |||||||||
|
SABOV |
78.6 (81.5) | 78.9 (81.5) | 76.6 (84.1) | 76.5 (84.1) | 78.9 (81.9) | 79.9 (81.9) | 81.2 (88.4) | ||||||||
|
SHUV |
77.5 (80.2) | 77.5 (80.2) | 91.8 (99.5) | 90.8 (99.5) | 77.6 (80.6) | 78.3 (80.6) | 76.9 (82.4) | 77.5 (83.6) | |||||||
|
AINOV |
76.9 (79.8) | 76.6 (79.8) | 91.2 (99.1) | 91.2 (99.1) | 78.2 (80.2) | 78.3 (80.2) | 77.3 (82.8) | 78.1 (84.1) | 93.9 (99.5) | ||||||
|
SIMV |
78.6 (80.2) | 78.6 (80.2) | 77.8 (83.2) | 77.5 (83.2) | 79.2 (80.2) | 80.5 (80.6) | 78.8 (81.5) | 77.8 (81.1) | 78.1 (82.8) | 78.5 (83.2) | |||||
|
OROV |
69.8 (69.9) | 69.5 (69.9) | 67.3 (69.5) | 69.8 (69.5) | 68.5 (69.9) | 70.2 (69.5) | 69.5 (68.2) | 68.2 (69) | 67.8 (69) | 68 (69) | 69.3 (72.1) | ||||
| Medium segment | |||||||||||||||
|
SHAV |
48.2 (36.5) | ||||||||||||||
|
PEAV |
48.3 (36.6) | 54.4 (47.6) | |||||||||||||
|
SANV |
48.1 (36.9) | 55.0 (47.9) | 83.9 (89.9) | ||||||||||||
|
SATV |
82.1 (90.1) | 48.5 (36.7) | 48.6 (37.2) | 49.4 (37.3) | |||||||||||
|
DOUV |
81.7 (88.9) | 48.6 (36.6) | 48.7 (37.0) | 49.5 (36.9) | 85.8 (91.5) | ||||||||||
|
AKAV |
47.3 (35.6) | 54.2 (48.6) | 55.2 (49.4) | 55.9 (49.2) | 48.0 (35.8) | 47.2 (36.3) | |||||||||
|
SABOV |
47.8 (36.8) | 53.0 (46.8) | 55.1 (48.2) | 55.3 (49.6) | 47.8 (36.7) | 47.3 (36.6) | 60.0 (56.4) | ||||||||
|
SHUV |
59.9 (56.0) | 48.1 (35.6) | 48.5 (35.9) | 49.9 (36.8) | 60.1 (56.3) | 60.2 (56.3) | 47.1 (36.0) | 47.1 (34.8) | |||||||
|
AINOV |
60.2 (56.9) | 47.5 (35.0) | 47.5 (35.7) | 48.4 (36.5) | 60.4 (57.1) | 60.4 (57.0) | 46.2 (35.1) | 47.3 (35.4) | 71.5 (76.1) | ||||||
|
SIMV |
56.5 (50.8) | 48.7 (37.7) | 47.8 (37.2) | 48.2 (37.5) | 57.1 (50.1) | 56.5 (49.8) | 46.5 (37.3) | 47.3 (36.7) | 58.3 (50.1) | 58.4 (51.4) | |||||
|
OROV |
48.6 (34.2) | 45.6 (33.4) | 46.3 (34.5) | 45.8 (34.3) | 48.1 (34.9) | 47.7 (34.2) | 44.8 (32.7) | 45.0 (34.3) | 48.9 (35.7) | 48.9 (36.4) | 50.2 (36.6) | ||||
| Large segment | |||||||||||||||
|
SHAV |
92.9 (98.4) | ||||||||||||||
|
PEAV |
66.9 (68.7) | 65.9 (68.3) | |||||||||||||
|
SANV |
66.7 (69.2) | 66.5 (69.0) | 84.8 (93.8) | ||||||||||||
|
SATV |
84.5 (95.8) | 84.9 (95.7) | 66.2 (68.1) | 66.6 (68.6) | |||||||||||
|
DOUV |
84.5 (94.8) | 84.5 (94.4) | 66.0 (68.1) | 66.0 (68.5) | 87.1 (96.1) | ||||||||||
|
AKAV |
67.3 (70.8) | 67.0 (70.8) | 65.9 (68.2) | 65.7 (68.1) | 67.3 (70.9) | 66.9 (70.3) | |||||||||
|
SABOV |
66.6 (70.7) | 66.0 (70.7) | 65.4 (67.9) | 65.0 (68.0) | 66.2 (70.4) | 66.3 (70.2) | 71.1 (78.9) | ||||||||
|
SHUV |
66.1 (68.6) | 65.9 (68.3) | 78.3 (88.8) | 78.6 (90.5) | 66.2 (68.4) | 66.5 (68.2) | 65.6 (68.1) | 65.5 (68.0) | |||||||
|
AINOV |
66.6 (68.7) | 65.8 (68.5) | 78.5 (88.5) | 79.1 (90.1) | 66.2 (68.2) | 66.1 (68.2) | 66.2 (67.9) | 65.8 (67.8) | 85.4 (95.4) | ||||||
|
SIMV |
67.6 (69.9) | 67.3 (69.7) | 67.4 (70.7) | 68.0 (70.7) | 67.4 (70.3) | 67.5 (70.0) | 67.3 (70.1) | 66.9 (70.4) | 67.5 (70.8) | 67.9 (71.0) | |||||
|
OROV |
60.4 (57.5) | 60.0 (57.4) | 61.2 (58.7) | 60.9 (58.5) | 60.1 (57.9) | 60.5 (57.5) | 60.9 (58.3) | 60.1 (58.2) | 61.3 (59.1) | 61.1 (58.7) | 60.7 (58.3) | ||||
*Values shown are nt (aa) identities, %. Boldface indicates SBV sequence identities compared with DOUV, SATV, and SHAV. SBV, Schmallenberg virus; SHAV, Shamonda virus; PEAV, Peaton virus; SANV, Sango virus; SATV, Sathuperi virus; DOUV, Douglas virus; AKAV, Akabane virus; SHUV, Shuni virus; AINOV, Aino virus; SIMV, Simbu virus.
1These authors contributed equally to this article.
Page created: September 14, 2012
Page updated: September 14, 2012
Page reviewed: September 14, 2012
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