Volume 18, Number 11—November 2012
Research
Sources of Dengue Viruses Imported into Queensland, Australia, 2002–2010
, Judith A. Northill, and Alyssa T. Pyke
Table 2
Description of DENV virus strains analyzed, Queensland, Australia, 2002–2010*
| Serotype/sequence name | Geographic origin | Year isolated | GenBank accession no. |
|---|---|---|---|
| DENV-1 | |||
|
Bali 2003 |
Bali | 2003 | JN415488 |
|
Bali 2010a |
Bali | 2010 | JN415489 |
|
Bali 2010b |
Bali | 2010 | JN415490 |
|
Bali 2010c |
Bali | 2010 | JN415491 |
|
Bali 2010d |
Bali | 2010 | JN415492 |
|
Bali 2010e |
Bali | 2010 | JN415493 |
|
Bali 2010f |
Bali | 2010 | JN415494 |
|
Cairns 2003 |
Cairns, Australia | 2003 | JN415495 |
|
Cambodia 2007 |
Cambodia | 2007 | JN415496 |
|
Cook Islands 2002 |
Cook Islands | 2002 | JN415497 |
|
Cook Islands 2006 |
Cook Islands | 2006 | JN415498 |
|
East Timor 2000 |
Timor-Leste | 2000 | JN415499 |
|
East Timor 2008 |
Timor-Leste | 2008 | JN415500 |
|
East Timor 2009 |
Timor-Leste | 2009 | JN415501 |
|
East Timor 2010 |
Timor-Leste | 2010 | JN415502 |
|
Fiji 2002 |
Fiji | 2002 | JN415503 |
|
Fiji 2006a |
Fiji | 2006 | JN415504 |
|
Fiji 2006b |
Fiji | 2006 | JN415505 |
|
Guyana 2008 |
Guyana | 2008 | JN415506 |
|
India 2008 |
India | 2008 | JN415507 |
|
India 2010 |
India | 2010 | JN415486 |
|
Indonesia 2010a |
Indonesia | 2010 | JN415508 |
|
Indonesia 2010b |
Indonesia | 2010 | JN415510 |
|
Jakarta 2004 |
Jakarta | 2004 | AY858983† |
|
Laos 2007 |
Laos | 2007 | JN415509 |
|
Malaysia 1972 |
Malaysia | 1972 | AF425622† |
|
Malaysia 2005 |
Malaysia | 2005 | JN415511 |
|
Malaysia 2008 |
Malaysia | 2008 | JN415512 |
|
Malaysia 2010 |
Malaysia | 2010 | JN415513 |
|
Mareeba 2003 |
Mareeba, Australia | 2003 | JN415514 |
|
Palau 2000 |
Palau | 2000 | JN415515 |
|
Philippines 2005 |
The Philippines | 2005 | JN415516 |
|
Philippines 2010 |
The Philippines | 2010 | JN415517 |
|
PNG 2003 |
Papua New Guinea | 2003 | JN415518 |
|
PNG 2009 |
Papua New Guinea | 2009 | JN415519 |
|
Samoa 2001 |
Samoa | 2001 | JN415520 |
|
Singapore 2003 |
Singapore | 2003 | FJ469907† |
|
Singapore 2005 |
Singapore | 2005 | EU081246† |
|
Singapore 2005 |
Singapore | 2005 | EU081247† |
|
Singapore 2008 |
Singapore | 2008 | JN415521 |
|
Solomon Islands 2002 |
Solomon Islands | 2002 | JN415522 |
|
Southeast Asia 2007 |
Southeast Asia | 2007 | JN415523 |
|
Southeast Asia 2005 |
Southeast Asia | 2005 | JN415529 |
|
Sri Lanka 2004 |
Sri Lanka | 2004 | JN415524 |
|
Sumatra 1998 |
Sumatra | 1998 | AB189121† |
|
Thailand 1954 |
Thailand | 1954 | D10513† |
|
Thailand 1980 |
Thailand | 1980 | AY732474† |
|
Thailand 2001 |
Thailand | 2001 | JN415525 |
|
Thailand 2008a |
Thailand | 2008 | JN415526 |
|
Thailand 2008b |
Thailand | 2008 | JN415527 |
|
Thailand 2010 |
Thailand | 2010 | JN415528 |
|
Tonga 2008 |
Tonga | 2008 | JN415530 |
|
Townsville 2008 |
Townsville, Australia | 2008 | JN415531 |
|
Townsville 2009 |
Townsville, Australia | 2009 | JN415532 |
|
Venezuela 2007 |
Venezuela | 2007 | EU482609† |
|
Vietnam 2006 |
Vietnam | 2006 | JN415533 |
|
Vietnam 2006 |
Vietnam | 2006 | EU482818† |
|
Vietnam 2008a |
Vietnam | 2008 | JN415534 |
|
Vietnam 2008b |
Vietnam | 2008 | JN415535 |
|
Vietnam South 2008 |
Vietnam | 2008 | GU131812† |
|
Vietnam 2010 |
Vietnam | 2010 | JN415487 |
|
Yap Island 2004 |
Yap Island | 2004 | AB204803† |
| DENV-2 | |||
|
Bali 2009 |
Bali | 2009 | JN568242 |
|
Bali 2010 |
Bali | 2010 | JN568243 |
|
Borneo 2009 |
Borneo | 2009 | JN568247 |
|
Brunei 2005 |
Brunei | 2005 | EU179858† |
|
Cairns 2003a |
Cairns, Australia | 2003 | JN568248 |
|
Cairns 2003b |
Cairns, Australia | 2003 | JN568249 |
|
Cairns 2004 |
Cairns, Australia | 2004 | JN568250 |
|
Cairns 2006 |
Cairns, Australia | 2006 | JN568251 |
|
Cairns 2008 |
Cairns, Australia | 2008 | JN568252 |
|
Cairns 2010 |
Cairns, Australia | 2010 | JN568253 |
|
Cambodia 2003 |
Cambodia | 2003 | GQ868621† |
|
Cambodia 2008 |
Cambodia | 2008 | GU131924† |
|
China 2001 |
China | 2001 | EF051521† |
|
East Timor 2000 |
Timor-Leste | 2000 | JN568254 |
|
East Timor 2002 |
Timor-Leste | 2002 | JN568255 |
|
East Timor 2004 |
Timor-Leste | 2004 | JN568256 |
|
East Timor 2010 |
Timor-Leste | 2010 | JN568257 |
|
India 2001 |
India | 2001 | DQ448237† |
|
India 2009 |
India | 2009 | JN568258 |
|
India 2003 |
India | 2003 | JN568260 |
|
India 2010 |
India | 2010 | JN568259 |
|
Indonesia 2004 |
Indonesia | 2004 | AY858035† |
|
Kuranda 2002 |
Kuranda, Australia | 2002 | JN568261 |
|
Laos 2010 |
Laos | 2010 | JN568244 |
|
Mt Isa 2010 |
Mt Isa, Australia | 2010 | JN568262 |
|
New Guinea C 1944 |
New Guinea | 1944 | AF038403† |
|
Peru 1996 |
Peru | 1996 | IQT1797† |
|
Philippines 2003 |
The Philippines | 2003 | JN568263 |
|
Philippines 2010a |
The Philippines | 2010 | JN568264 |
|
Philippines 2010b |
The Philippines | 2010 | JN568265 |
|
PNG 2003 |
PNG | 2003 | JN568266 |
|
PNG 2009 |
PNG | 2009 | JN568241 |
|
PNG 2010a |
PNG | 2010 | JN568267 |
|
PNG 2010b |
PNG | 2010 | JN568268 |
|
PNG 2010c |
PNG | 2010 | JN568269 |
|
PNG 2010d |
PNG | 2010 | JN568270 |
|
Singapore 2008 |
Singapore | 2008 | GU370051† |
|
Southeast Asia 2010b |
Southeast Asia | 2010 | JN568276 |
|
Southeast Asia 2010a |
Southeast Asia | 2010 | JN568277 |
|
Sri Lanka 1996 |
Sri Lanka | 1996 | FJ882602† |
|
Sumatra 2009 |
Sumatra | 2009 | JN568271 |
|
Sumatra 2010 |
Sumatra | 2010 | JN568272 |
|
Taiwan 2001 |
Taiwan | 2001 | DQ645541† |
|
Thailand 1996 |
Thailand | 1996 | AF100459† |
|
Thailand 2001 |
Thailand | 2001 | DQ181797† |
|
Thailand 2007 |
Thailand | 2007 | JN568273 |
|
Thailand 2010a |
Thailand | 2010 | JN568274 |
|
Thailand 2010b |
Thailand | 2010 | JN568275 |
|
Thailand 2010c |
Thailand | 2010 | JN568245 |
|
Torres Strait 2003 |
Torres Strait, Australia | 2003 | JN568278 |
|
Townsville 1993 |
Townsville, Australia | 1993 | AY037116† |
|
Townsville 2010a |
Townsville, Australia | 2010 | JN568279 |
|
Townsville 2010b |
Townsville, Australia | 2010 | JN568246 |
|
Tully 2010 |
Tully, Australia | 2010 | JN568280 |
|
Venezuela 1990 |
Venezuela | 1990 | GQ868540† |
|
Vietnam 2005 |
Vietnam | 2005 | FM210207† |
|
Vietnam 2006 |
Vietnam | 2006 | EU569721† |
|
Vietnam 2010a |
Vietnam | 2010 | JN568281 |
|
Vietnam 2010b |
Vietnam | 2010 | JN568282 |
| DENV-3 | |||
|
Bali 2009 |
Bali | 2009 | JN568284 |
|
Bali 2010a |
Bali | 2010 | JN568283 |
|
Bali 2010b |
Bali | 2010 | JN575560 |
|
Bali 2010c |
Bali | 2010 | JN575561 |
|
Cairns 1998 |
Cairns, Australia | 1998 | JN575562 |
|
Cairns 2008a |
Cairns, Australia | 2008 | JN575563 |
|
Cairns 2008 |
Cairns, Australia | 2008 | JN575564 |
|
Cambodia 2006 |
Cambodia | 2006 | JN575565 |
|
East Timor 2000 |
Timor-Leste | 2000 | JN575566 |
|
Fiji 1992 |
Fiji | 1992 | L11422† |
|
India 1984 |
India | 1984 | L11424† |
|
Indonesia 1985 |
Indonesia | 1985 | L11428† |
|
Indonesia 1998 |
Indonesia | 1998 | AY265857† |
|
Indonesia 2004a |
Indonesia | 2004 | AY858037† |
|
Indonesia 2004b |
Indonesia | 2004 | AY858047† |
|
Indonesia 2008a |
Indonesia | 2008 | JN575567 |
|
Indonesia 2008b |
Indonesia | 2008 | JN575568 |
|
Philippines 1983 |
The Philippines | 1983 | L11432† |
|
Philippines 1997 |
The Philippines | 1997 | AY496879† |
|
Philippines 2010 |
The Philippines | 2010 | JN575570 |
|
PNG 2008 |
Papua New Guinea | 2008 | JN575571 |
|
PNG 2010a |
Papua New Guinea | 2010 | JN575572 |
|
PNG 2010b |
Papua New Guinea | 2010 | JN575573 |
|
Puerto Rico 1977 |
Puerto Rico | 1977 | L11434† |
|
Samoa 1986 |
Samoa | 1986 | L11435† |
|
Singapore 2005 |
Singapore | 2005 | EU081221† |
|
Southeast Asia 2008 |
Southeast Asia | 2008 | JN575569 |
|
Sri Lanka 1991 |
Sri Lanka | 1991 | L11438† |
|
Tahiti 1989 |
Tahiti | 1989 | L11619† |
|
Taiwan 1998 |
Taiwan | 1998 | DQ675532† |
|
Taiwan 1999 |
Taiwan | 1999 | DQ675533† |
|
Thailand 1973 |
Thailand | 1973 | L11620† |
|
Thailand 1987 |
Thailand | 1987 | L11442† |
|
Thailand 1997a |
Thailand | 1997 | JN575574 |
|
Thailand 1997b |
Thailand | 1997 | JN575575 |
|
Thailand 2010 |
Thailand | 2010 | JN575576 |
|
Townsville 2006 |
Townsville, Australia | 2006 | JN575577 |
|
Townsville 2007 |
Townsville, Australia | 2007 | JN575578 |
|
Townsville 2009 |
Townsville, Australia | 2009 | JN575579 |
|
Vietnam 2007 |
Vietnam | 2007 | EU482461† |
|
Vietnam 2008 |
Vietnam | 2008 | JN575580 |
| DENV-4 | |||
|
Bali 2010 |
Bali | 2010 | JN575583 |
|
Brazil 1982 |
Brazil | 1982 | U18425† |
|
Cairns 2002 |
Cairns, Australia | 2002 | JN575584 |
|
China 2001 |
China | 2001 | AF289029† |
|
Cook Islands 2009 |
Cook Islands | 2009 | JN575582 |
|
Dominica 1981 |
Dominica | 1981 | AF326573† |
|
East Timor 2000 |
Timor-Leste | 2000 | JN575585 |
|
East Timor 2007 |
Timor-Leste | 2007 | JN575586 |
|
El Salvador 1983 |
El Salvador | 1983 | U18426† |
|
Fiji 2008 |
Fiji | 2008 | JN575587 |
|
Indonesia 1973 |
Indonesia | 1973 | U18428† |
|
Indonesia 1977 |
Indonesia | 1977 | U18430† |
|
Indonesia 2010a |
Indonesia | 2010 | JN575588 |
|
Indonesia 2010b |
Indonesia | 2010 | JN575589 |
|
Innisfail 2009 |
Innisfail, Australia | 2009 | JN575581 |
|
Jakarta 2004 |
Jakarta | 2004 | AY858049† |
|
Malaysia 2009 |
Malaysia | 2009 | JN575590 |
|
New Caledonia 1984 |
New Caledonia | 1984 | U18432† |
|
Philippines 1984 |
The Philippines | 1984 | U18435† |
|
Philippines 2004 |
The Philippines | 2004 | JN575591 |
|
Puerto Rico 1986 |
Puerto Rico | 1986 | U18436† |
|
Samoa 2008 |
Samoa | 2008 | JN575592 |
|
Solomon Islands 2008 |
Solomon Islands | 2008 | JN575593 |
|
Sri Lanka 1978 |
Sri Lanka | 1978 | U18437† |
|
Tahiti 1985 |
Tahiti | 1985 | U18439† |
|
Thailand 1978 |
Thailand | 1978 | U18441† |
|
Thailand 1984 |
Thailand | 1984 | U18442† |
|
Thailand 1997 |
Thailand | 1997 | AY618988† |
|
Thailand 2001 |
Thailand | 2001 | AY618992† |
|
Thailand 2010 |
Thailand | 2010 | JN575594 |
|
Torres Strait 2005 |
Torres Strait, Australia | 2005 | JN575595 |
|
Townsville 2005 |
Townsville, Australia | 2005 | JN575596 |
*DENV, dengue virus; PNG, Papua New Guinea.
†Sequences obtained from GenBank.