Volume 20, Number 1—January 2014
Novel Avian Coronavirus and Fulminating Disease in Guinea Fowl, France
|Read type||No. (%) reads|
|Total reads generated||476,430|
|Cellular reads||142,739 (30)|
|Bacterial reads||246,787 (51.8)|
|Archaea reads||35,271 (7.4)|
|Phage, plant, and insect virus reads||32,477 (6.8)|
|Eukaryote virus reads||19,155 (4.0)|
|Coronavirus reads||1,441 (7.5)†|
- Brahem A, Demarquez N, Beyrie M, Vuillaume A, Fleury HJ. A highly virulent togavirus-like agent associated with the fulminating disease of guinea fowl. Avian Dis. 1992;36:143–8 .
- Andral B, Lagadic M, Louzis C, Guillou JP, Gourreau JM. Fulminating disease in guinea fowl: etiological investigation. Point Veterinaire. 1987;19:515–20.
- Toffan A, Catania S, Salviato A, De Battisti C, Vascellari M, Toson M, Experimental infection of poults and guinea fowl with genetically distinct avian astroviruses. Avian Pathol. 2012;41:429–35.
- van Boheemen S, de Graaf M, Lauber C, Bestebroer TM, Raj VS, Zaki AM, Genomic characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. MBio. 2012;3:e00473–12.
- Gouilh MA, Puechmaille SJ, Gonzalez J-P, Teeling E, Kittayapong P, Manuguerra J-C. SARS-coronavirus ancestor’s foot-prints in South-East Asian bat colonies and the refuge theory. Infect Genet Evol. 2011;11:1690–702.
- Victoria JG, Kapoor A, Li L, Blinkova O, Slikas B, Wang C, Metagenomic analyses of viruses in stool samples from children with acute flaccid paralysis. J Virol. 2009;83:4642–51.
- Angly FE, Willner D, Prieto-Davó A, Edwards RA, Schmieder R, Vega-Thurber R, The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes. PLOS Comput Biol. 2009;5:e1000593.
- Stephensen CB, Casebolt DB, Gangopadhyay NN. Phylogenetic analysis of a highly conserved region of the polymerase gene from 11 coronaviruses and development of a consensus polymerase chain reaction assay. Virus Res. 1999;60:181–9.
- Breslin JJ, Smith LG, Barnes HJ, Guy JS. Comparison of virus isolation, immunohistochemistry, and reverse transcriptase–polymerase chain reaction procedures for detection of turkey coronavirus. Avian Dis. 2000;44:624–31.
- Jackwood MW, Hall D, Handel A. Molecular evolution and emergence of avian gammacoronaviruses. Infect Genet Evol. 2012;12:1305–11.
- Maurel S, Toquin D, Briand FX, Queguiner M, Allee C, Bertin J, First full-length sequences of the S gene of European isolates reveal further diversity among turkey coronaviruses. Avian Pathol. 2011;40:179–89.
- Cavanagh D. Coronaviruses in poultry and other birds. Avian Pathol. 2005;34:439–48.
- Woo PCY, Lau SKP, Lam CSF, Lau CCY, Tsang AKL, Lau JHN, Discovery of seven novel mammalian and avian coronaviruses in the genus Deltacoronavirus supports bat coronaviruses as the gene source of Alphacoronavirus and Betacoronavirus and avian coronaviruses as the gene source of Gammacoronavirus and Deltacoronavirus. J Virol. 2012;86:3995–4008.
- Jackwood MW, Boynton TO, Hilt DA, McKinley ET, Kissinger JC, Paterson AH, Emergence of a group 3 coronavirus through recombination. Virology. 2010;398:98–108.
- Circella E, Camarda A, Martella V, Bruni G, Lavazza A, Buonavoglia C. Coronavirus associated with an enteric syndrome on a quail farm. Avian Pathol. 2007;36:251–8.
1These authors contributed equally to this article.