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Volume 20, Number 11—November 2014
Research

Novel Chlamydia trachomatis Strains in Heterosexual Sex Partners, Indianapolis, Indiana, USA

Byron E. Batteiger1, Raymond Wan, James A. Williams, Linda He, Arissa Ma, J. Dennis Fortenberry, and Deborah Dean1Comments to Author 
Author affiliations: Indiana University School of Medicine, Indianapolis, Indiana, USA (B.E. Batteiger, J.A. Williams, J.D. Fortenberry); Children’s Hospital Oakland Research Institute, Oakland, California, USA (R. Wan, L. He, A. Ma, D. Dean); University of California, Berkeley, California, USA (D. Dean); University of California, San Francisco, California, USA (D. Dean)

Main Article

Table

Chlamydia trachomatis ompA genotypes, MLSTs, and SNPs for samples from heterosexual patient pairs (dyads) in Indianapolis, Indiana, USA, April 2000–October 2003*

Dyad no. Sample nos. ompA genotype ST ompA genotype(s) associated with ST–closest hit genotype homology (SNPs)†
1 J/112i J/UW36/Cx 15 J/UW36/Cx & K/UW36/Cx–K/42nl & K/49nl
J/113i
2 K/186i K/UW36/Cx 15 J/UW36/Cx & K/UW36/Cx–K/42nl & K/49nl
K/187i
3 H/114i H/UW4/Cx 19 D/UW3/Cx, G/UW57/Cx, H/UW4/Cx, I/UW12/Ur, J/UW36/Cx–G/SotonG1
H/115i
4 Ia/94i Ia/UW202 23 D/UW3/Cx, Ia/UW202–Ia/UW202
Ia/95i
5 Ia/118i Ia/UW202 23 D/UW3/Cx, Ia/UW202–Ia/UW202
Ia/119i
6 Ia4/177i Ia4 23 D/UW3/Cx, Ia/UW202, Ia4–Ia/UW202
Ia4/180i
7 Ia/178i Ia/UW202 23 D/UW3/Cx, Ia/UW202–Ia/UW202
Ia/179i
8 Ia/183i Ia/UW202 23 D/UW3/Cx, Ia/UW202–Ia/UW202
Ia/184i
9 D2/96i D2 34 D2, D/UW3/Cx, E/Bour, F/ICCal3, Ja/UW92–F/ICCal3
D2/97i
10 F/98i F/ICCal3 34 D2, D/UW3/Cx, E/Bour, F/ICCal3, Ja/UW92–F/ICCal3
F/99i
11 F/181i F/ICCal3 34 D2, D/UW3/Cx, E/Bour, F/ICCal3, Ja/UW92–F/ICCal3
F/182i
12 D2/189i D2 34 D2, D/UW3/Cx, E/Bour, F/ICCal3, Ja/UW92–F/ICCal3
D2/190i
13 F/191i F/ICCal3 34 D2, D/UW3/Cx, E/Bour, F/ICCal3, Ja/UW92–F/ICCal3
F/192i
14 E/88i E/Bour 39 E/Bour–E/Bour
F/89i
15 E/102i E/Bour 39 E/Bour–E/Bour
E/103i
16 E/106i E/Bour 39 E/Bour–E/Bour
E/107i
17 E/116i E/Bour 39 E/Bour–E/Bour
E/117i
18 E6/120i E/Bour 39 E/Bour–E/Bour
E6/121i
19 E/108i E/Bour 39 E/Bour–E/Bour
E/109i
20 E/110i E/Bour 39 E/Bour–E/Bour
E/111i
21 E/171i E/Bour 39 E/Bour–E/Bour
E/172i
22 D1/90i D1 45 D1–F/ICCal3 (glyA: 176, 264)
D1/91i
23 E/92i E/Bour 46 E/Bour–Da/TW448 (leuS: 58, 96)
E/93i
24 E/104i E/Bour 46 E/Bour–Da/TW448 (leuS: 58, 96)
E/105i
25 E/173i E/Bour 46 E/Bour–Da/TW448 (leuS: 58, 96)
E/174i
26 E/185i E/Bour 46 E/Bour–Da/TW448 (leuS: 58, 96)
E/188i
27 E/100i E/Bour 47 E/Bour–E/Bour (hybG: 257, 289, 451; pykF: 317, 384)
E/101i
28 F4/175i F4 55 F4–F/ICCal3 (leuS: 44)
F4/176i

*Boldface indicates putative recombinant strains. MLST, multilocus sequence typing; SNP, single-nucleotide polymorphism; ST, sequence type.
†ompA genotypes that are associated with each ST are listed; after the dash, the genotype that is the closest hit for the 7 MLST housekeeping genes is listed. In some cases, the closest hit is a reference strain with SNPs in a gene; the location of the SNP is listed based on the start position of the gene as designated by the genome sequence of D/UW3/Cx (GenBank accession no. AE001273.1).

Main Article

1These authors contributed equally to this article.

Page created: October 17, 2014
Page updated: October 17, 2014
Page reviewed: October 17, 2014
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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