Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages
Xiangyu Deng
, Prerak T. Desai, Henk C. den Bakker, Matthew Mikoleit, Beth Tolar, Eija Trees, Rene S. Hendriksen, Jonathan G. Frye, Steffen Porwollik, Bart C. Weimer, Martin Wiedmann, George M. Weinstock, Patricia I. Fields
1, and Michael McClelland
1
Author affiliations: University of Georgia, Griffin, Georgia, USA (X. Deng); University of California Irvine, Irvine, California, USA (P.T. Desai, S. Porwollik, M. McClelland); Cornell University, Ithaca, New York, USA (H.C. den Bakker, M. Wiedmann); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (M. Mikoleit, B. Tolar, E. Trees, P.I. Fields); Technical University of Denmark, Lyngby, Denmark (R.S. Hendriksen); US Department of Agriculture, Athens, Georgia, USA (J.G. Frye); University of California Davis, Davis, California, USA (B.C. Weimer); Washington University School of Medicine, St. Louis, Missouri, USA (G.M. Weinstock)
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Figure 2
Figure 2. Inferred number of Salmonella enterica serotype Enteritidis lineages over time based on a constant effective population size model using BEAST (16). Blue shading indicates 95% CIs.
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