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Volume 20, Number 9—September 2014
Research

Genomic Epidemiology of Salmonella enterica Serotype Enteritidis based on Population Structure of Prevalent Lineages

Xiangyu DengComments to Author , Prerak T. Desai, Henk C. den Bakker, Matthew Mikoleit, Beth Tolar, Eija Trees, Rene S. Hendriksen, Jonathan G. Frye, Steffen Porwollik, Bart C. Weimer, Martin Wiedmann, George M. Weinstock, Patricia I. Fields1, and Michael McClelland1
Author affiliations: University of Georgia, Griffin, Georgia, USA (X. Deng); University of California Irvine, Irvine, California, USA (P.T. Desai, S. Porwollik, M. McClelland); Cornell University, Ithaca, New York, USA (H.C. den Bakker, M. Wiedmann); Centers for Disease Control and Prevention, Atlanta, Georgia, USA (M. Mikoleit, B. Tolar, E. Trees, P.I. Fields); Technical University of Denmark, Lyngby, Denmark (R.S. Hendriksen); US Department of Agriculture, Athens, Georgia, USA (J.G. Frye); University of California Davis, Davis, California, USA (B.C. Weimer); Washington University School of Medicine, St. Louis, Missouri, USA (G.M. Weinstock)

Main Article

Figure 3

Genetic lineage III (LIII). Isolates from human blood and stool samples were colored in red and blue respectively. Four clades are highlighted and designated as A through D representing individual outbreak clades identified from clinical cases in Thailand in 2008. Branches with bootstrap value greater than 0.9 were shown by thickened lines. Age of the ancestral node (median MRCA) was labeled.

Figure 3. Salmonella enterica serotype Enteritidis genetic lineage III. Isolates from human blood and stool samples are indicated by red and blue, respectively. Four clades are highlighted and designated A–D, representing individual outbreak clades identified from clinical cases in Thailand in 2008. Branches with bootstrap value >0.9 are indicated by thickened lines. Age of the ancestral node (median most recent common ancestor) is labeled. Inset indicates the location of the highlighted lineage on the global phylogenetic tree.

Main Article

1These authors contributed equally to this article.

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