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Volume 22, Number 3—March 2016
Research

Identification of Novel Zoonotic Activity of Bartonella spp., France

Muriel Vayssier-Taussat, Sara Moutailler, Françoise Féménia, Philippe Raymond, Olivier Croce, Bernard La Scola, Pierre-Edouard Fournier, and Didier Raoult
Author affiliations: Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail, Maisons Alfort, France (M. Vayssier-Taussat, S. Moutailler, F. Féménia); Groupe Chronimed, Saint-Péray, France (P. Raymond); Aix-Marseille Université, Marseille, France (O. Croce, B. La Scola, P-E. Fournier, D. Raoult)

Main Article

Table 3

Assembly information and main characteristics of 6 sequenced Bartonella genomes from patients in France expressing novel zoonotic activity

Genome characteristics Species and isolate identification
B. henselae MVT01 B. henselae MVT02 B. henselae MVT03 B. tribocorum MVT04 B. doshiae MVT05 B. schoenbuchensis MVT07
GenBank accession nos. HG965802 NZ_LN879429 HG969191 HG969192–HG969193 CCBL010000001–CCBL010000013 HG977193–HG977197
Size, bp 1,902,535 1,905,383 1,975,503 2,609,404 1,919,109 1,734,324
No. contigs 1 1 1 2 13 5
Average read coverage 87 94 110 46 15 41
Average read length, trimmed 183 190 192 194 168 193
Total no. reads, trimmed 946,882 1,034,894 1,263,492 738,522 261,0852 666,371
Total no. predicted genes 1,659 1,658 1,726 2,335 1,720 1,574
Protein-coding genes 1,603 1,602 1,668 2,279 1,654 1,519
rRNA operons 2 2 2 2 2 2
tRNAs 43 43 45 43 53 41
Other RNAs 7 7 7 7 9 8
GC% content 38.18 38.18 38.09 38.84 37.82 35.58
Plasmid 0 0 0 1 0 1
Genome used as a reference for assembly (accession nos.) B. henselae Houston-1 (NC_005956) B. henselae Houston-1 (NC_005956) B. henselae Houston-1 (NC_005956) B. tribocorum CIP 105476 (NC_010161, NC_010160) B. doshiae NCTC 12862 (NZ_JH725094– NZ_JH725100) B. schoenbuchensis m07a (NZ_KB915627–NZ_KB915629, NZ_CM001846, NZ_CM001845)

Main Article

Page created: February 18, 2016
Page updated: February 18, 2016
Page reviewed: February 18, 2016
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
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