Volume 24, Number 4—April 2018
Dispatch
Novel Highly Pathogenic Avian Influenza A(H5N6) Virus in the Netherlands, December 2017
Table
Genetic composition of the HPAI H5N6 virus isolated in the Netherlands, 2017*
Virus segment | GISAID no.† | Identity, % | Origin |
---|---|---|---|
Polymerase basic 2 | |||
A/mallard duck/Netherlands/15/2011 (H6N8) | EPI889820 | 97 | European LPAI |
A/Eurasian teal/Netherlands/1/2011 (H3N8) | EPI889410 | 97 | |
A/mallard duck/Netherlands/20/2011 (H6N8) | EPI889594 | 97 | |
A/greater white-fronted goose/Netherlands/6/2011 (H6N8) |
EPI1010712 |
97 |
|
Polymerase basic 1 | |||
A/chicken/Kalmykia/2643/2016 (H5N8) | EPI909458 | 99 | H5N8 HPAI 2016 |
A/gadwall/Kurgan/2442/2016 (H5N8) | EPI961447 | 99 | |
A/T_Dk/NL-Werkendam/16014159–001/2016 (H5N5) | EPI1117251 | 98 | |
A/T_Dk/NL-Zeewolde/16013976–005/2016 (A/H5N8 |
EPI1019844 |
98 |
|
Polymerase | |||
A/T_Dk/NL-Monnickendam/16013865–006–008/2016 (H5N8) | EPI1019770 | 99 | H5N8 HPAI 2016 |
A/magpie/NL-Volendam/16014331–002/2016 (H5N8) | EPI1019722 | 99 | |
A/L-bl-ba-gull/NL-Sovon/16014324–014/2016 (H5N8) | EPI1019706 | 99 | |
A/G_c_grebe/NL-Monnickendam/16013865–009–010/2016 (H5N8) |
EPI1019650 |
99 |
|
Hemagglutinin | |||
A/Eur_Wig/NL-Zoeterwoude/16015702–010/2016 (H5N8) | EPI1019638 | 99 | H5N8 HPAI 2016 |
A/Eur_Wig/NL-Reeuwijk/16015903–003/2016 (H5N8) | EPI1019590 | 99 | |
A/Eur_Wig/NL-Leidschendam/16015697–007/2016 (H5N8) | EPI1019582 | 99 | |
A/Eur_Wig/NL-Gouda/16015824–001/2016 (H5N8) |
EPI1019550 |
99 |
|
Nucleoprotein | |||
A/gadwall/Kurgan/2442/2016 (H5N8) | EPI961450 | 99 | H5N8 HPAI 2016 |
A/wild duck/Tatarstan/3059/2016 (H5N8) | EPI909453 | 99 | |
A/T_Dk/NL-Werkendam/16014159–001/2016 (H5N5) | EPI1117254 | 99 | |
A/mute swan/Kaliningrad/132/2017 (H5N8) |
EPI1044548 |
99 |
|
Neuraminidase | |||
A/chicken/Greece/39_2017b/2017 (H5N6) | EPI1122895 | 98 | H5N6 HPAI 2017 |
A/spoonbill/Taiwan/DB645/2017 (H5N6) | EPI1119073 | 97 | |
A/barnacle goose/Netherlands/2/2014 (H3N6) | EPI1011098 | 97 | European LPAI |
A/mute swan/Shimane/3211A001/2017 (H5N6) |
LC335983 |
97 |
|
Matrix protein | |||
A/mulard_duck/Hungary/59163/2016 (H5N8) | EPI1032553 | 99 | H5N8 HPAI 2016 |
A/mulard_duck/Hungary/62902/2016 (H5N8) | EPI1032527 | 99 | |
A/mulard_duck/Hungary/60369/2016 (H5N8) | EPI1032519 | 99 | |
A/goose/Hungary/59763/2016 (H5N8) |
EPI1032511 |
99 |
|
Nonstructural protein | |||
A/duck/Hungary/60441/2016 (H5N8) | EPI866979 | 99 | H5N8 HPAI 2016 |
A/goose/Italy/17VIR6358–3/2017 (H5N8) | EPI1081973 | 99 | |
A/swan/Italy/17VIR7064–1/2017 (H5N8) | EPI1081921 | 99 | |
A/mulard duck/Hungary/59163/2016 (H5N8) | EPI1032556 | 99 |
*HPAI, highly pathogenic avian influenza; LPAI, low pathogenicity avian influenza.
†From GISAID EpiFlu database (http://platform.gisaid.org).