Skip directly to site content Skip directly to page options Skip directly to A-Z link Skip directly to A-Z link Skip directly to A-Z link
Volume 25, Number 3—March 2019
Research

Reassortments among Avian Influenza A(H5N1) Viruses Circulating in Indonesia, 2015–2016

Desniwaty Karo-karo, Rogier Bodewes, Hendra Wibawa, Made Artika, Eko Sugeng Pribadi, D. Diyantoro, Widya Pratomo, Agus Sugama, Nani Hendrayani, Iin Indasari, Michael Haryadi Wibowo, David Handojo Muljono, Jan Arend Stegeman, Guus KochComments to Author , and Diyantoro
Author affiliations: Utrecht University, Utrecht, the Netherlands (D. Karo-karo, R. Bodewes, J.A. Stegeman); Indonesian Ministry of Agriculture, Jakarta, Indonesia (D. Karo-karo, H. Wibawa); Bogor Agricultural University, Bogor, Indonesia (I.M. Artika, E.S. Pribadi, D. Diyantoro, W. Pratomo); Eijkman Institute for Molecular Biology, Jakarta (I.M. Artika, D.H. Muljono); Livestock and Animal Health Agency of District Subang, Subang, Indonesia (A. Sugama)

Main Article

Figure 3

Number of samples in study of avian influenza A(H5N1) viruses circulating in Indonesia, 2015–2016, by district (A), time (B), poultry type (C), poultry sector (D), and farm size (E) from which the complete HPAIV H5N1 genome could be obtained.

Figure 3. Reassortment events of avian influenza A(H5N1) viruses in samples from Indonesia, 2015–2016, some of which were confirmed using maximum-likelihood analysis with parent strains clade 2.3.2.1c, 2005-11 (clade 2.1.3.2a), and Asia low pathogenicity avian influenza virus. Parent strains appear above the dotted line and 13 detected reassortment types below the dotted line. HA, hemagglutinin; LPAI, low pathogenicity avian influenza virus; MP, matrix protein; NA, neuraminidase; NP, nucleoprotein; NS, nonstructural protein; PA, polymerase; PB1, polymerase basic 1; PB2; polymerase basic 2. Green bars indicate clade 2.1.3.1a; blue, clade 2.1.3.2c subgroup A; red, clade 2.1.3.2c subgroup B; violet, Asia LPAI.

Main Article

Page created: February 19, 2019
Page updated: February 19, 2019
Page reviewed: February 19, 2019
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.
file_external