Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015
Sasan Fereidouni, Graham L. Freimanis, Mukhit Orynbayev, Paolo Ribeca, John Flannery, Donald P. King, Steffen Zuther, Martin Beer, Dirk Höper, Aidyn Kydyrmanov, Kobey Karamendin, and Richard Kock
Author affiliations: University of Veterinary Medicine Vienna, Vienna, Austria (S. Fereidouni); The Pirbright Institute, Pirbright, UK (G.L. Freimanis, P. Ribeca, J. Flannery, D.P. King); Research Institute for Biological Safety Problems, Otar, Kazakhstan (M. Orynbayev); Association for the Conservation of Biodiversity of Kazakhstan, Astana, Kazakhstan (S. Zuther); Frankfurt Zoological Society, Frankfurt, Germany (S. Zuther); Friedrich-Loeffler-Institut, Greifswald-Insel Riems, Germany (M. Beer, D. Höper); Institute of Microbiology and Virology, Almaty, Kazakhstan (A. Kydrymanov, K. Karamendin); Royal Veterinary College, London, UK (R. Kock)
Main Article
Table 5
Summary of the most relevant results obtained by RIEMS analyses of the datasets (sequenced from shotgun libraries generated from random primed cDNA) used in an investigation of a mass die-off of saiga antelopes, Kazakhstan, 2015
Organism |
No. (%) reads
|
Sample 2* (lib01416) |
Sample 5* (lib01417) |
Sample 7 (lib01418) |
Sample 8 (lib01419) |
Input reads |
411,640 (100) |
376,210 (100) |
372,387 (100) |
354,958 (100) |
Quality filtered reads† |
12,786 (3.1) |
10,793 (2.9) |
11,559 (3.1) |
10,895 (3.1) |
Unclassified reads† |
1,776 (0.43) |
1,520 (0.40) |
1,626 (0.44) |
1,494 (0.42) |
|
|
|
|
|
Classified reads† |
397,078 (96.5) |
363,897 (96.7) |
359,202 (96.5) |
342,569 (96.5) |
Host‡ |
64,618 (16.3) |
4,770 (1.3) |
3,414 (1.0) |
4,784 (1.4) |
Pasteurellaceae‡ |
317,009 (79.8) |
345,893 (95.1) |
339,484 (94.5) |
324,770 (94.8) |
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Page created: May 20, 2019
Page updated: May 20, 2019
Page reviewed: May 20, 2019
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