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Volume 26, Number 11—November 2020
Dispatch

Two New Cases of Pulmonary Infection by Mycobacterium shigaense, Japan

Shiomi Yoshida1Comments to Author , Tomotada Iwamoto1, Takehiko Kobayashi1, Ryohei Nomoto, Yoshikazu Inoue, Kazunari Tsuyuguchi, and Katsuhiro Suzuki
Author affiliations: National Hospital Organization Kinki-chuo Chest Medical Center, Sakai, Osaka, Japan (S. Yoshida, T. Kobayashi, Y. Inoue, K. Tsuyuguchi, K. Suzuki); Kobe Institute of Health, Kobe, Japan (T. Iwamoto, R. Nomoto)

Main Article

Figure 2

Phylogenetic tree based on whole-genome sequence data of 19 species in the Mycobacterium simiae complex and M. avium 104 from the GenBank database. The tree was constructed by using concatenated alignments of the 1,399 core genes with Roary, the pan genome pipeline (https://sanger-pathogens.github.io/Roary), and displayed by using Dendroscope (https://www.dendroscope.org). Box at the bottom shows an enlarged version of the branch of M. shigaense in the tree. Scale bar indicates nucleotide substitutions per site.

Figure 2. Phylogenetic tree based on whole-genome sequence data of 19 species in the Mycobacterium simiae complex and M. avium 104 from the GenBank database. The tree was constructed by using concatenated alignments of the 1,399 core genes with Roary, the pan genome pipeline (https://sanger-pathogens.github.io/Roary), and displayed by using Dendroscope (https://www.dendroscope.org). Box at the bottom shows an enlarged version of the branch of M. shigaense in the tree. Scale bar indicates nucleotide substitutions per site.

Main Article

1These authors contributed equally to this article.

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