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Volume 26, Number 7—July 2020
Dispatch

Shuni Virus in Wildlife and Nonequine Domestic Animals, South Africa

Jumari Steyn, Pebetsi Motlou, Charmaine van Eeden, Marthi Pretorius, Voula I. Stivaktas, June Williams, Louwtjie P. Snyman, Peter E. Buss, Brianna Beechler, Anna Jolles, Eva Perez-Martin, Jan G. Myburgh, Johan Steyl, and Marietjie VenterComments to Author 
Author affiliations: University of Pretoria Faculty of Health, Pretoria, South Africa (J. Steyn, P. Motlou, C. van Eeden, M. Pretorius, V.I. Stivaktas, M. Venter); University of Pretoria Faculty of Veterinary Science, Pretoria (J. Williams, J.G. Myburgh, J. Steyl); Durban Natural Science Museum, Durban, South Africa (L.P. Snyman); South African National Parks, Kruger National Park, South Africa (P.E. Buss); Oregon State University, Corvallis, Oregon, USA (B. Beechler, A. Jolles); The Pirbright Institute, Woking, UK (E. Perez-Martin)

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Figure 2

Phylogram of clade 1a, lineage I, of the Simbu serogroup (15) recovered from maximum-likelihood and Bayesian analyses of the small segment for SHUV isolates from wildlife and nonequine domestic animals, South Africa and reference sequences. Bootstrap values (maximum likelihood >60) and posterior probabilities (>0.8) are displayed on branches as support values. GenBank accession numbers for sequences from this study (black circles): MVA11_10_Rhinoceros, JQ726395; MVA08_10_Crocodile, JQ72639

Figure 2. Phylogram of clade 1a, lineage I, of the Simbu serogroup (15) recovered from maximum-likelihood and Bayesian analyses of the small segment for SHUV isolates from wildlife and nonequine domestic animals, South Africa and reference sequences. Bootstrap values (maximum likelihood >60) and posterior probabilities (>0.8) are displayed on branches as support values. GenBank accession numbers for sequences from this study (black circles): MVA11_10_Rhinoceros, JQ726395; MVA08_10_Crocodile, JQ726396; MVA43_10_Buffalo, JQ726397; MVA35_10_Warthog, JQ726398; ZRU077_18_Buffalo, MK114084; ZRU121_18_Sable, MK114085; ZRU137_18_Rhinoceros, MK114086. GenBank accession numbers, virus types, and locations for reference sequences: An10107, AF362405, SHUV Nigeria; AINOV, M22011, Japan; VRC713423–2 KAIV, AF362394, India; SAE72_09_Horse, HQ610138, South Africa; SAE27_10_Horse, HQ610139, South Africa; SAE38_10_Horse, HQ610140, South Africa; SAE39_10_Horse, HQ610141, South Africa; SAE48_10_Horse, HQ610142, South Africa; SAE109_10_Horse, HQ610143, South Africa; SAE18_09_Horse, KC510272, South Africa; SAE87_11_Horse, KC525997, South Africa; Shuni_215_14, KP900859, Israel; Shuni_263_14, KP900860, Israel; Shuni_267_2_14, KP900861, Israel; Shuni_267_4_14, KP900862, Israel; Shuni_273_14, KP900865, Israel; Shuni_274_14, KP900867, Israel; Shuni_275_1_14, KP900869, Israel; Shuni_275_2_14, KP900871, Israel; Shuni_2417_1_14, KP900872, Israel; Shuni_2417_2_14, KP900875, Israel; Shuni_2504_1_14, KP900877, Israel; Shuni_2504_2_14, KP900878, Israel; Shuni_2504_3_14, KP900882, Israel; 2504_3_14, KU937313, Israel; SHUV_ISR-274_14, KT946779, Israel; SHUV_ISR-2417_2_14, KT946780, Israel; ISR-129_16, MF361846, Israel; ISR-242_16, MF361849, Israel; ISR-2067_16, MF361852, Israel; ISR-2162_16, MF361855, Israel; CSIRO 110, MH484320, Australia; An5077, AF362402, Nigeria. AINOV, ainovirus; KAIV, kaikalurvirus; PEAV, Peaton virus; SANV, Sango virus; SHUV, Shuni virus..

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