Volume 26, Number 8—August 2020
Dispatch
SARS-CoV-2 Phylogenetic Analysis, Lazio Region, Italy, February–March 2020
Barbara Bartolini, Martina Rueca, Cesare Ernesto Maria Gruber, Francesco Messina, Fabrizio Carletti, Emanuela Giombini, Eleonora Lalle, Licia Bordi, Giulia Matusali, Francesca Colavita, Concetta Castilletti, Francesco Vairo, Giuseppe Ippolito, Maria Rosaria Capobianchi, and Antonino Di Caro
Table 2
Consensus sequences of severe acute respiratory syndrome coronavirus 2 samples, Italy, 2020*
| Wuhan-Hu-1 strain | Nucleotide position | INMI3 | INMI4 | INMI5 | INMI6 | INMI7 | INMI9 | INMI8 | INMI10 | Amino acid | Region |
|---|---|---|---|---|---|---|---|---|---|---|---|
| A | 187 | G | Noncoding | UTR | |||||||
| C | 241 | T | T | T | T | T | T | T | T | Noncoding | UTR |
| C | 2062 | T | Noncoding | UTR | |||||||
| C | 3037 | T | T | T | T | T | T | T | T | Syn | Orf1ab |
| G | 4255 | T | Syn | Orf1ab | |||||||
| C | 14408 | T | T | T | T | T | T | T | T | P4715L | Orf1ab |
| T | 16456 | G | S5398A | Orf1ab | |||||||
| A | 20268 | G | Syn | Orf1ab | |||||||
| C | 21575 | T | L5F | Spike glycoprotein | |||||||
| A | 23403 | G | G | G | G | G | G | G | G | D614G | Spike glycoprotein |
| C | 23575 | T | Syn | Spike glycoprotein | |||||||
| A | 26530 | G | D3G | Membrane glycoprotein | |||||||
| C | 28881 | A | R203K | Nucleocapsid protein | |||||||
| G | 28882 | A | R203K | Nucleocapsid protein | |||||||
| G |
28883 |
C |
G204R |
Nucleocapsid protein |
|||||||
| *Nucleotide positions refer to the Wuhan-Hu-1 reference genome (GenBank accession no. MN908947). Orf, open reading frame; Syn, synonymous substitution; UTR, untranslated region. | |||||||||||
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Page updated: July 18, 2020
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