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Volume 27, Number 1—January 2021
Research

Precise Species Identification by Whole-Genome Sequencing of Enterobacter Bloodstream Infection, China

Wenjing Wu1, Li Wei1, Yu Feng, Yi Xie, and Zhiyong ZongComments to Author 
Author affiliations: West China Hospital, Sichuan University, Chengdu, China (W. Wu, L. Wei, Y. Feng, Y. Zie, Z. Zong); State Key Laboratory of Biotherapy, Chengdu (W. Wu, Y. Feng, Z. Zong)

Main Article

Table 1

Enterobacter strains in genomic study of Enterobacter bloodstream infection, China*

Strain Date Species, by isDDH ST† Carbapenemase BSI types
 Hospitalization, d
 Death
P S CLA HA Before BSI After BSI
090034 201706 Enterobacter asburiae N12 + 0 27
090058 201805 E. asburiae 879 + + + 22 18
090031 201711 E. bugandensis N10 + 1 0 +
090283 201610 E. bugandensis N16 + + 7 6
090210 201607 E. bugandensis 499 + 1 16
090029 201709 E. bugandensis 718 NDM-5 + + 71 16 +
090028 201708 E. chuandaensis N9 + 1 11
090005 201706 E. cloacae 1 NDM-1 + + + 29 11
090016 201703 E. cloacae 519 + + 17 24
090014 201712 E. cloacae 922 + + 0 10
090027 201704 E. hormaechei 528 + + 24 38
090003 201705 E. hormaechei 696 + + 0 15
045002 201609 E. huaxiensis N1 + 0 7
090008 201709 E. huaxiensis N1 + + 3 23
090017 201702 E. ludwigii 12 + + 6 8
045158 201607 E. roggenkampii N2 + + 3 7
090037 201608 E. roggenkampii 984 + + + 14 8
090032 201712 E. sichuanensis N11 + + + 6 16 +
090004 201706 E. xiangfangensis N3 + + 6 13
090006 201707 E. xiangfangensis N4 + + 12 8
090007 201707 E. xiangfangensis N5 + + 24 19
090012 201711 E. xiangfangensis N6 + 0 3
090018 201705 E. xiangfangensis N7 + + + 12 14 +
090020 201712 E. xiangfangensis N8 + + + 4 60
090057 201804 E. xiangfangensis N15 NDM-1 + + + 36 43
090015 201712 E. xiangfangensis 50 + 0 2
090026 201704 E. xiangfangensis 50 + + 11 52
090035 201712 E. xiangfangensis 127 + + 13 20
045001 201801 E. xiangfangensis 171 NDM-1 + + + 8 33
090011 201710 E. xiangfangensis 171 NDM-5 + + 7 14 +
090022 201802 E. xiangfangensis 171 NDM-5 + + 40 20
090023 201802 E. xiangfangensis 171 NDM-5 + + + 26 19
090055 201806 E. xiangfangensis 171 NDM-5 + + 14 14
090059 201805 E. xiangfangensis 171 NDM-5 + + + 17 31
090043 201612 E. xiangfangensis 337 + + 11 4 +
090013 201711 E. xiangfangensis 418 NDM-5 + + + 28 10 +
090038 201609 E. xiangfangensis 418 + + 3 33
090060 201806 E. xiangfangensis 550 + + + 20 8 +
090042 201611 E. xiangfangensis 828 + + 5 3
090036 201605 Taxon 1 N13 + + + 13 22
090019 201706 Taxon 1 78 + + 16 62
090030 201709 Taxon 1 78 + + + 0 15
090039 201610 Taxon 1 78 + + 12 8 +
090021 201801 Taxon 1 97 + + + 5 28
090009 201709 Taxon 1 104 + + 5 66
090033 201704 Taxon 1 316 + + 10 3
090056 201803 Taxon 1 568 + + 11 7
090040 201611 Taxon 2 N14 + + + 208 370

*BSI, bloodstream infection; CLA, central line–associated; HA, healthcare associated; isDDH, in silico DNA–DNA hybridization; P, primary; S, secondary; ST, sequence type.
†There are 16 new sequence types, which are temporarily assigned N1–N16 (Appendix 1 Table 3).

Main Article

1These authors contributed equally to this article.

Page created: November 24, 2020
Page updated: December 21, 2020
Page reviewed: December 21, 2020
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