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Volume 27, Number 4—April 2021
Research

Genomic Surveillance of a Globally Circulating Distinct Group W Clonal Complex 11 Meningococcal Variant, New Zealand, 2013–2018

Zuyu Yang1, Xiaoyun Ren1, Heather Davies, Timothy Wood, Liza Lopez, Jill Sherwood, Audrey Tiong, and Philip E. CarterComments to Author 
Author affiliation: Institute of Environmental Science and Research, Porirua, New Zealand

Main Article

Figure 3

Phylogenetic analysis of New Zealand Neisseria meningitidis isolates, 2013–2018. Maximum-likelihood phylogeny was constructed by using a generalized time reversible substitution model and core single-nucleotide polymorphism alignments with RAxML version 8.2.12 (33). Branches with >90% bootstrap consensus (200 bootstrap replications) are highlighted with a red dot. Isolate names and clades are colored according to their clonal complex designation. The inner ring indicates the group and outer ring designates the year of isolation of the isolates. N1 lineage corresponds to sequence type that does not have clonal complex designation. NA corresponds to individual isolates where clonal complex is not assigned. Scale bar indicates average number of substitutions per site.

Figure 3. Phylogenetic analysis of New Zealand Neisseria meningitidis isolates, 2013–2018. Maximum-likelihood phylogeny was constructed by using a generalized time reversible substitution model and core single-nucleotide polymorphism alignments with RAxML version 8.2.12 (33). Branches with >90% bootstrap consensus (200 bootstrap replications) are highlighted with a red dot. Isolate names and clades are colored according to their clonal complex designation. The inner ring indicates the group and outer ring designates the year of isolation of the isolates. N1 lineage corresponds to sequence type that does not have clonal complex designation. NA corresponds to individual isolates where clonal complex is not assigned. Scale bar indicates average number of substitutions per site.

Main Article

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1These authors contributed equally to this article.

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