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Volume 28, Number 7—July 2022
Research

Nipah Virus Detection at Bat Roosts after Spillover Events, Bangladesh, 2012–2019

Clifton D. McKee1Comments to Author , Ausraful Islam1, Mohammed Ziaur Rahman, Salah Uddin Khan, Mahmudur Rahman, Syed M. Satter, Ariful Islam, Claude Kwe Yinda, Jonathan H. Epstein, Peter Daszak, Vincent J. Munster, Peter J. Hudson, Raina K. Plowright, Stephen P. Luby, and Emily S. Gurley
Author affiliations: Bloomberg School of Public Health, Johns Hopkins University, Baltimore, Maryland, USA (C.D. McKee, E.S. Gurley); icddr,b, Dhaka, Bangladesh (Ausraful Islam, M.Z. Rahman, S.U. Khan, M. Rahman, S.M. Satter, E.S. Gurley); Institute of Epidemiology, Disease Control and Research, Dhaka, Bangladesh (M.Z. Rahman); Global Health Development/Eastern Mediterranean Public Health Network, Amman, Jordan (M.Z. Rahman); Deakin University, Geelong, Victoria, Australia (Ariful Islam); EcoHealth Alliance, New York, New York, USA (Ariful Islam, J.H. Epstein, P. Daszak); National Institute of Allergy and Infectious Diseases, National Institutes of Health, Hamilton, Montana, USA (C.K. Yinda, V.J. Munster); Pennsylvania State University, State College, Pennsylvania, USA (P.J. Hudson); Montana State University, Bozeman, Montana, USA (R.K. Plowright); Stanford University, Stanford, California, USA (S.P. Luby)

Main Article

Table

Nipah virus detection success from study of bat roosts after spillover events, Bangladesh, 2012–2019, compared with results from previous study*

Test ID
Data from this study

Data from Epstein et al. (37)
Statistical test results
Description
No. positive/no tested (%)
Description
No. positive/no tested (%)
A
Positive sampling visits based on pooled roost urine aliquots where >1 urine aliquot tested positive†
11/47
(23%)

Positive sampling visits based on individual urine samples from longitudinal roosts where >1 individual urine sample tested positive
5/18
(28%)
OR = 0.84,‡ p = 0.76
B
Positive roost urine aliquots from sampled roosts across 47 sampling visits†
51/1,042
(4.9%)

Positive individual urine samples from longitudinal roosts across 18 sampling visits
8/1,671
(0.48%)
χ2 = 56.8, p<0.001
C
Positive roost urine aliquots from the first visit to 23 sampled roosts†
45/525
(8.6%)

Positive individual urine samples from 8 roosts from a cross-sectional spatial study across districts of Bangladesh
0/555
(0%)
χ2 = 47.5, p<0.001
D
Positive roost urine aliquots from sampled roosts across 47 sampling visits†
51/1042
(4.9%)

Positive roost urine aliquots from longitudinal roosts and cross-sectional roosts, excluding samples from outbreak investigations
2/725
(0.28%)
χ2 = 29.8, p<0.001
E Positive roost urine aliquots from sampled roosts across 47 sampling visits† 51/1042
(4.9%) Positive roost urine aliquots from outbreak investigations, n = 4 19/104 (18.3%) χ2 = 27.2, p<0.001

*ID, identification; OR, odds ratio. †Excludes the 7 roosts associated with 5 human cases that initially tested negative for Nipah virus. Statistical tests that included these samples produced similar results. ‡By Fisher exact test.

Main Article

References
  1. Chadha  MS, Comer  JA, Lowe  L, Rota  PA, Rollin  PE, Bellini  WJ, et al. Nipah virus-associated encephalitis outbreak, Siliguri, India. Emerg Infect Dis. 2006;12:23540. DOIPubMedGoogle Scholar
  2. Chua  KB, Bellini  WJ, Rota  PA, Harcourt  BH, Tamin  A, Lam  SK, et al. Nipah virus: a recently emergent deadly paramyxovirus. Science. 2000;288:14325. DOIPubMedGoogle Scholar
  3. Hsu  VP, Hossain  MJ, Parashar  UD, Ali  MM, Ksiazek  TG, Kuzmin  I, et al. Nipah virus encephalitis reemergence, Bangladesh. Emerg Infect Dis. 2004;10:20827. DOIPubMedGoogle Scholar
  4. Ching  PKG, de los Reyes  VC, Sucaldito  MN, Tayag  E, Columna-Vingno  AB, Malbas  FF Jr, et al. Outbreak of henipavirus infection, Philippines, 2014. Emerg Infect Dis. 2015;21:32831. DOIPubMedGoogle Scholar
  5. Kessler  MK, Becker  DJ, Peel  AJ, Justice  NV, Lunn  T, Crowley  DE, et al. Changing resource landscapes and spillover of henipaviruses. Ann N Y Acad Sci. 2018;1429:7899. DOIPubMedGoogle Scholar
  6. Williamson  MM, Hooper  PT, Selleck  PW, Westbury  HA, Slocombe  RF. Experimental hendra virus infectionin pregnant guinea-pigs and fruit Bats (Pteropus poliocephalus). J Comp Pathol. 2000;122:2017. DOIPubMedGoogle Scholar
  7. Halpin  K, Hyatt  AD, Fogarty  R, Middleton  D, Bingham  J, Epstein  JH, et al.; Henipavirus Ecology Research Group. Pteropid bats are confirmed as the reservoir hosts of henipaviruses: a comprehensive experimental study of virus transmission. Am J Trop Med Hyg. 2011;85:94651. DOIPubMedGoogle Scholar
  8. Nikolay  B, Salje  H, Hossain  MJ, Khan  AKMD, Sazzad  HMS, Rahman  M, et al. Transmission of Nipah virus—14 years of investigations in Bangladesh. N Engl J Med. 2019;380:180414. DOIPubMedGoogle Scholar
  9. Arunkumar  G, Chandni  R, Mourya  DT, Singh  SK, Sadanandan  R, Sudan  P, et al.; Nipah Investigators People and Health Study Group. Outbreak investigation of Nipah virus disease in Kerala, India, 2018. J Infect Dis. 2019;219:186778. DOIPubMedGoogle Scholar
  10. Robinson  TP, Wint  GRW, Conchedda  G, Van Boeckel  TP, Ercoli  V, Palamara  E, et al. Mapping the global distribution of livestock. PLoS One. 2014;9:e96084. DOIPubMedGoogle Scholar
  11. Walsh  MG, Sawleshwarkar  S, Hossain  S, Mor  SM. Whence the next pandemic? The intersecting global geography of the animal-human interface, poor health systems and air transit centrality reveals conduits for high-impact spillover. One Health. 2020;11:100177. DOIPubMedGoogle Scholar
  12. Luby  SP, Gurley  ES, Hossain  MJ. Transmission of human infection with Nipah virus. Clin Infect Dis. 2009;49:17438. DOIPubMedGoogle Scholar
  13. Gurley  ES, Hegde  ST, Hossain  K, Sazzad  HMS, Hossain  MJ, Rahman  M, et al. Convergence of humans, bats, trees, and culture in Nipah virus transmission, Bangladesh. Emerg Infect Dis. 2017;23:144653. DOIPubMedGoogle Scholar
  14. Pulliam  JRC, Epstein  JH, Dushoff  J, Rahman  SA, Bunning  M, Jamaluddin  AA, et al.; Henipavirus Ecology Research Group (HERG). Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis. J R Soc Interface. 2012;9:89101. DOIPubMedGoogle Scholar
  15. Mohd Nor  MN, Gan  CH, Ong  BL. Nipah virus infection of pigs in peninsular Malaysia. Rev Sci Tech. 2000;19:1605. DOIPubMedGoogle Scholar
  16. Chua  KB. Nipah virus outbreak in Malaysia. J Clin Virol. 2003;26:26575. DOIPubMedGoogle Scholar
  17. Mehand  MS, Al-Shorbaji  F, Millett  P, Murgue  B. The WHO R&D Blueprint: 2018 review of emerging infectious diseases requiring urgent research and development efforts. Antiviral Res. 2018;159:637. DOIPubMedGoogle Scholar
  18. Geisbert  TW, Bobb  K, Borisevich  V, Geisbert  JB, Agans  KN, Cross  RW, et al. A single dose investigational subunit vaccine for human use against Nipah virus and Hendra virus. NPJ Vaccines. 2021;6:23. DOIPubMedGoogle Scholar
  19. Olival  KJ, Hosseini  PR, Zambrana-Torrelio  C, Ross  N, Bogich  TL, Daszak  P. Host and viral traits predict zoonotic spillover from mammals. [Erratum in: Nature. 2017;548:612]. Nature. 2017;546:64650. DOIPubMedGoogle Scholar
  20. Whitmer  SLM, Lo  MK, Sazzad  HMS, Zufan  S, Gurley  ES, Sultana  S, et al. Inference of Nipah virus evolution, 1999–2015. Virus Evol. 2021;7:veaa062.
  21. Anderson  DE, Islam  A, Crameri  G, Todd  S, Islam  A, Khan  SU, et al. Isolation and full-genome characterization of Nipah viruses from bats, Bangladesh. Emerg Infect Dis. 2019;25:16670. DOIPubMedGoogle Scholar
  22. Olival  KJ, Latinne  A, Islam  A, Epstein  JH, Hersch  R, Engstrand  RC, et al. Population genetics of fruit bat reservoir informs the dynamics, distribution and diversity of Nipah virus. Mol Ecol. 2020;29:97085. DOIPubMedGoogle Scholar
  23. Harcourt  BH, Lowe  L, Tamin  A, Liu  X, Bankamp  B, Bowden  N, et al. Genetic characterization of Nipah virus, Bangladesh, 2004. Emerg Infect Dis. 2005;11:15947. DOIPubMedGoogle Scholar
  24. Rahman  MZ, Islam  MM, Hossain  ME, Rahman  MM, Islam  A, Siddika  A, et al. Genetic diversity of Nipah virus in Bangladesh. Int J Infect Dis. 2021;102:14451. DOIPubMedGoogle Scholar
  25. Makeyev  EV, Bamford  DH. Evolutionary potential of an RNA virus. J Virol. 2004;78:211420. DOIPubMedGoogle Scholar
  26. Drake  JW, Holland  JJ. Mutation rates among RNA viruses. Proc Natl Acad Sci U S A. 1999;96:139103. DOIPubMedGoogle Scholar
  27. Luby  SP. The pandemic potential of Nipah virus. Antiviral Res. 2013;100:3843. DOIPubMedGoogle Scholar
  28. Mounts  AW, Kaur  H, Parashar  UD, Ksiazek  TG, Cannon  D, Arokiasamy  JT, et al.; Nipah Virus Nosocomial Study Group. A cohort study of health care workers to assess nosocomial transmissibility of Nipah virus, Malaysia, 1999. J Infect Dis. 2001;183:8103. DOIPubMedGoogle Scholar
  29. Goh  KJ, Tan  CT, Chew  NK, Tan  PSK, Kamarulzaman  A, Sarji  SA, et al. Clinical features of Nipah virus encephalitis among pig farmers in Malaysia. N Engl J Med. 2000;342:122935. DOIPubMedGoogle Scholar
  30. Parashar  UD, Sunn  LM, Ong  F, Mounts  AW, Arif  MT, Ksiazek  TG, et al. Case-control study of risk factors for human infection with a new zoonotic paramyxovirus, Nipah virus, during a 1998-1999 outbreak of severe encephalitis in Malaysia. J Infect Dis. 2000;181:17559. DOIPubMedGoogle Scholar
  31. Arankalle  VA, Bandyopadhyay  BT, Ramdasi  AY, Jadi  R, Patil  DR, Rahman  M, et al. Genomic characterization of Nipah virus, West Bengal, India. Emerg Infect Dis. 2011;17:9079. DOIPubMedGoogle Scholar
  32. Chong  HT, Hossain  MJ, Tan  CT. Differences in epidemiologic and clinical features of Nipah virus encephalitis between the Malaysian and Bangladesh outbreaks. Neurol Asia. 2008;13:236.
  33. Hossain  MJ, Gurley  ES, Montgomery  JM, Bell  M, Carroll  DS, Hsu  VP, et al. Clinical presentation of nipah virus infection in Bangladesh. Clin Infect Dis. 2008;46:97784. DOIPubMedGoogle Scholar
  34. Mire  CE, Satterfield  BA, Geisbert  JB, Agans  KN, Borisevich  V, Yan  L, et al. Pathogenic differences between Nipah virus Bangladesh and Malaysia strains in primates: implications for antibody therapy. Sci Rep. 2016;6:30916. DOIPubMedGoogle Scholar
  35. Clayton  BA, Middleton  D, Bergfeld  J, Haining  J, Arkinstall  R, Wang  L, et al. Transmission routes for nipah virus from Malaysia and Bangladesh. Emerg Infect Dis. 2012;18:198393. DOIPubMedGoogle Scholar
  36. DeBuysscher  BL, de Wit  E, Munster  VJ, Scott  D, Feldmann  H, Prescott  J. Comparison of the pathogenicity of Nipah virus isolates from Bangladesh and Malaysia in the Syrian hamster. PLoS Negl Trop Dis. 2013;7:e2024. DOIPubMedGoogle Scholar
  37. Epstein  JH, Anthony  SJ, Islam  A, Kilpatrick  AM, Ali Khan  S, Balkey  MD, et al. Nipah virus dynamics in bats and implications for spillover to humans. Proc Natl Acad Sci U S A. 2020;117:29190201. DOIPubMedGoogle Scholar
  38. Yadav  PD, Shete  AM, Kumar  GA, Sarkale  P, Sahay  RR, Radhakrishnan  C, et al. Nipah virus sequences from humans and bats during Nipah outbreak, Kerala, India, 2018. Emerg Infect Dis. 2019;25:10036. DOIPubMedGoogle Scholar
  39. Naser  AM, Hossain  MJ, Sazzad  HMS, Homaira  N, Gurley  ES, Podder  G, et al. Integrated cluster- and case-based surveillance for detecting stage III zoonotic pathogens: an example of Nipah virus surveillance in Bangladesh. Epidemiol Infect. 2015;143:192230. DOIPubMedGoogle Scholar
  40. Ao  TT, Rahman  M, Haque  F, Chakraborty  A, Hossain  MJ, Haider  S, et al. Low-cost national media-based surveillance system for public health events, Bangladesh. Emerg Infect Dis. 2016;22:7202. DOIPubMedGoogle Scholar
  41. Daniels  P, Ksiazek  T, Eaton  BT. Laboratory diagnosis of Nipah and Hendra virus infections. Microbes Infect. 2001;3:28995. DOIPubMedGoogle Scholar
  42. Nikolay  B, Salje  H, Khan  AKMD, Sazzad  HMS, Satter  SM, Rahman  M, et al. A framework to monitor changes in transmission and epidemiology of emerging pathogens: lessons from Nipah virus. J Infect Dis. 2020;221(Suppl 4):S3639. DOIPubMedGoogle Scholar
  43. Giles  JR, Peel  AJ, Wells  K, Plowright  RK, McCallum  H, Restif  O. Optimizing noninvasive sampling of a zoonotic bat virus. Ecol Evol. 2021;11:1230721. DOIPubMedGoogle Scholar
  44. Lo  MK, Lowe  L, Hummel  KB, Sazzad  HMS, Gurley  ES, Hossain  MJ, et al. Characterization of Nipah virus from outbreaks in Bangladesh, 2008-2010. Emerg Infect Dis. 2012;18:24855. DOIPubMedGoogle Scholar
  45. Rahman  MA, Hossain  MJ, Sultana  S, Homaira  N, Khan  SU, Rahman  M, et al. Date palm sap linked to Nipah virus outbreak in Bangladesh, 2008. Vector Borne Zoonotic Dis. 2012;12:6572. DOIPubMedGoogle Scholar
  46. Burnham  KP, Anderson  DR. Multimodel inference: understanding AIC and BIC in model selection. Sociol Methods Res. 2004;33:261304. DOIGoogle Scholar
  47. Khan  MSU, Hossain  J, Gurley  ES, Nahar  N, Sultana  R, Luby  SP. Use of infrared camera to understand bats’ access to date palm sap: implications for preventing Nipah virus transmission. EcoHealth. 2010;7:51725. DOIPubMedGoogle Scholar
  48. Plowright  RK, Peel  AJ, Streicker  DG, Gilbert  AT, McCallum  H, Wood  J, et al. Transmission or within-host dynamics driving pulses of zoonotic viruses in reservoir–host populations. PLoS Negl Trop Dis. 2016;10:e0004796. DOIPubMedGoogle Scholar
  49. Khan  SU, Gurley  ES, Hossain  MJ, Nahar  N, Sharker  MAY, Luby  SP. A randomized controlled trial of interventions to impede date palm sap contamination by bats to prevent nipah virus transmission in Bangladesh. PLoS One. 2012;7:e42689. DOIPubMedGoogle Scholar

Main Article

1These first authors contributed equally to this article.

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