Volume 28, Number 7—July 2022
Research
Nipah Virus Detection at Bat Roosts after Spillover Events, Bangladesh, 2012–2019
Table
Test ID |
Data from this study |
Data from Epstein et al. (37) |
Statistical test results |
|||
Description |
No. positive/no tested (%) |
Description |
No. positive/no tested (%) |
|||
A |
Positive sampling visits based on pooled roost urine aliquots where >1 urine aliquot tested positive† |
11/47
(23%) |
Positive sampling visits based on individual urine samples from longitudinal roosts where >1 individual urine sample tested positive |
5/18
(28%) |
OR = 0.84,‡ p = 0.76 |
|
B |
Positive roost urine aliquots from sampled roosts across 47 sampling visits† |
51/1,042
(4.9%) |
Positive individual urine samples from longitudinal roosts across 18 sampling visits |
8/1,671
(0.48%) |
χ2 = 56.8, p<0.001 |
|
C |
Positive roost urine aliquots from the first visit to 23 sampled roosts† |
45/525
(8.6%) |
Positive individual urine samples from 8 roosts from a cross-sectional spatial study across districts of Bangladesh |
0/555
(0%) |
χ2 = 47.5, p<0.001 |
|
D |
Positive roost urine aliquots from sampled roosts across 47 sampling visits† |
51/1042
(4.9%) |
Positive roost urine aliquots from longitudinal roosts and cross-sectional roosts, excluding samples from outbreak investigations |
2/725
(0.28%) |
χ2 = 29.8, p<0.001 |
|
E | Positive roost urine aliquots from sampled roosts across 47 sampling visits† | 51/1042 (4.9%) | Positive roost urine aliquots from outbreak investigations, n = 4 | 19/104 (18.3%) | χ2 = 27.2, p<0.001 |
*ID, identification; OR, odds ratio. †Excludes the 7 roosts associated with 5 human cases that initially tested negative for Nipah virus. Statistical tests that included these samples produced similar results. ‡By Fisher exact test.
References
- Chadha MS, Comer JA, Lowe L, Rota PA, Rollin PE, Bellini WJ, et al. Nipah virus-associated encephalitis outbreak, Siliguri, India. Emerg Infect Dis. 2006;12:235–40. DOIPubMedGoogle Scholar
- Chua KB, Bellini WJ, Rota PA, Harcourt BH, Tamin A, Lam SK, et al. Nipah virus: a recently emergent deadly paramyxovirus. Science. 2000;288:1432–5. DOIPubMedGoogle Scholar
- Hsu VP, Hossain MJ, Parashar UD, Ali MM, Ksiazek TG, Kuzmin I, et al. Nipah virus encephalitis reemergence, Bangladesh. Emerg Infect Dis. 2004;10:2082–7. DOIPubMedGoogle Scholar
- Ching PKG, de los Reyes VC, Sucaldito MN, Tayag E, Columna-Vingno AB, Malbas FF Jr, et al. Outbreak of henipavirus infection, Philippines, 2014. Emerg Infect Dis. 2015;21:328–31. DOIPubMedGoogle Scholar
- Kessler MK, Becker DJ, Peel AJ, Justice NV, Lunn T, Crowley DE, et al. Changing resource landscapes and spillover of henipaviruses. Ann N Y Acad Sci. 2018;1429:78–99. DOIPubMedGoogle Scholar
- Williamson MM, Hooper PT, Selleck PW, Westbury HA, Slocombe RF. Experimental hendra virus infectionin pregnant guinea-pigs and fruit Bats (Pteropus poliocephalus). J Comp Pathol. 2000;122:201–7. DOIPubMedGoogle Scholar
- Halpin K, Hyatt AD, Fogarty R, Middleton D, Bingham J, Epstein JH, et al.; Henipavirus Ecology Research Group. Pteropid bats are confirmed as the reservoir hosts of henipaviruses: a comprehensive experimental study of virus transmission. Am J Trop Med Hyg. 2011;85:946–51. DOIPubMedGoogle Scholar
- Nikolay B, Salje H, Hossain MJ, Khan AKMD, Sazzad HMS, Rahman M, et al. Transmission of Nipah virus—14 years of investigations in Bangladesh. N Engl J Med. 2019;380:1804–14. DOIPubMedGoogle Scholar
- Arunkumar G, Chandni R, Mourya DT, Singh SK, Sadanandan R, Sudan P, et al.; Nipah Investigators People and Health Study Group. Outbreak investigation of Nipah virus disease in Kerala, India, 2018. J Infect Dis. 2019;219:1867–78. DOIPubMedGoogle Scholar
- Robinson TP, Wint GRW, Conchedda G, Van Boeckel TP, Ercoli V, Palamara E, et al. Mapping the global distribution of livestock. PLoS One. 2014;9:
e96084 . DOIPubMedGoogle Scholar - Walsh MG, Sawleshwarkar S, Hossain S, Mor SM. Whence the next pandemic? The intersecting global geography of the animal-human interface, poor health systems and air transit centrality reveals conduits for high-impact spillover. One Health. 2020;11:
100177 . DOIPubMedGoogle Scholar - Luby SP, Gurley ES, Hossain MJ. Transmission of human infection with Nipah virus. Clin Infect Dis. 2009;49:1743–8. DOIPubMedGoogle Scholar
- Gurley ES, Hegde ST, Hossain K, Sazzad HMS, Hossain MJ, Rahman M, et al. Convergence of humans, bats, trees, and culture in Nipah virus transmission, Bangladesh. Emerg Infect Dis. 2017;23:1446–53. DOIPubMedGoogle Scholar
- Pulliam JRC, Epstein JH, Dushoff J, Rahman SA, Bunning M, Jamaluddin AA, et al.; Henipavirus Ecology Research Group (HERG). Agricultural intensification, priming for persistence and the emergence of Nipah virus: a lethal bat-borne zoonosis. J R Soc Interface. 2012;9:89–101. DOIPubMedGoogle Scholar
- Mohd Nor MN, Gan CH, Ong BL. Nipah virus infection of pigs in peninsular Malaysia. Rev Sci Tech. 2000;19:160–5. DOIPubMedGoogle Scholar
- Mehand MS, Al-Shorbaji F, Millett P, Murgue B. The WHO R&D Blueprint: 2018 review of emerging infectious diseases requiring urgent research and development efforts. Antiviral Res. 2018;159:63–7. DOIPubMedGoogle Scholar
- Geisbert TW, Bobb K, Borisevich V, Geisbert JB, Agans KN, Cross RW, et al. A single dose investigational subunit vaccine for human use against Nipah virus and Hendra virus. NPJ Vaccines. 2021;6:23. DOIPubMedGoogle Scholar
- Olival KJ, Hosseini PR, Zambrana-Torrelio C, Ross N, Bogich TL, Daszak P. Host and viral traits predict zoonotic spillover from mammals. [Erratum in: Nature. 2017;548:612]. Nature. 2017;546:646–50. DOIPubMedGoogle Scholar
- Whitmer SLM, Lo MK, Sazzad HMS, Zufan S, Gurley ES, Sultana S, et al. Inference of Nipah virus evolution, 1999–2015. Virus Evol. 2021;7:veaa062.
- Anderson DE, Islam A, Crameri G, Todd S, Islam A, Khan SU, et al. Isolation and full-genome characterization of Nipah viruses from bats, Bangladesh. Emerg Infect Dis. 2019;25:166–70. DOIPubMedGoogle Scholar
- Olival KJ, Latinne A, Islam A, Epstein JH, Hersch R, Engstrand RC, et al. Population genetics of fruit bat reservoir informs the dynamics, distribution and diversity of Nipah virus. Mol Ecol. 2020;29:970–85. DOIPubMedGoogle Scholar
- Harcourt BH, Lowe L, Tamin A, Liu X, Bankamp B, Bowden N, et al. Genetic characterization of Nipah virus, Bangladesh, 2004. Emerg Infect Dis. 2005;11:1594–7. DOIPubMedGoogle Scholar
- Rahman MZ, Islam MM, Hossain ME, Rahman MM, Islam A, Siddika A, et al. Genetic diversity of Nipah virus in Bangladesh. Int J Infect Dis. 2021;102:144–51. DOIPubMedGoogle Scholar
- Makeyev EV, Bamford DH. Evolutionary potential of an RNA virus. J Virol. 2004;78:2114–20. DOIPubMedGoogle Scholar
- Drake JW, Holland JJ. Mutation rates among RNA viruses. Proc Natl Acad Sci U S A. 1999;96:13910–3. DOIPubMedGoogle Scholar
- Luby SP. The pandemic potential of Nipah virus. Antiviral Res. 2013;100:38–43. DOIPubMedGoogle Scholar
- Mounts AW, Kaur H, Parashar UD, Ksiazek TG, Cannon D, Arokiasamy JT, et al.; Nipah Virus Nosocomial Study Group. A cohort study of health care workers to assess nosocomial transmissibility of Nipah virus, Malaysia, 1999. J Infect Dis. 2001;183:810–3. DOIPubMedGoogle Scholar
- Goh KJ, Tan CT, Chew NK, Tan PSK, Kamarulzaman A, Sarji SA, et al. Clinical features of Nipah virus encephalitis among pig farmers in Malaysia. N Engl J Med. 2000;342:1229–35. DOIPubMedGoogle Scholar
- Parashar UD, Sunn LM, Ong F, Mounts AW, Arif MT, Ksiazek TG, et al. Case-control study of risk factors for human infection with a new zoonotic paramyxovirus, Nipah virus, during a 1998-1999 outbreak of severe encephalitis in Malaysia. J Infect Dis. 2000;181:1755–9. DOIPubMedGoogle Scholar
- Arankalle VA, Bandyopadhyay BT, Ramdasi AY, Jadi R, Patil DR, Rahman M, et al. Genomic characterization of Nipah virus, West Bengal, India. Emerg Infect Dis. 2011;17:907–9. DOIPubMedGoogle Scholar
- Chong HT, Hossain MJ, Tan CT. Differences in epidemiologic and clinical features of Nipah virus encephalitis between the Malaysian and Bangladesh outbreaks. Neurol Asia. 2008;13:23–6.
- Hossain MJ, Gurley ES, Montgomery JM, Bell M, Carroll DS, Hsu VP, et al. Clinical presentation of nipah virus infection in Bangladesh. Clin Infect Dis. 2008;46:977–84. DOIPubMedGoogle Scholar
- Mire CE, Satterfield BA, Geisbert JB, Agans KN, Borisevich V, Yan L, et al. Pathogenic differences between Nipah virus Bangladesh and Malaysia strains in primates: implications for antibody therapy. Sci Rep. 2016;6:30916. DOIPubMedGoogle Scholar
- Clayton BA, Middleton D, Bergfeld J, Haining J, Arkinstall R, Wang L, et al. Transmission routes for nipah virus from Malaysia and Bangladesh. Emerg Infect Dis. 2012;18:1983–93. DOIPubMedGoogle Scholar
- DeBuysscher BL, de Wit E, Munster VJ, Scott D, Feldmann H, Prescott J. Comparison of the pathogenicity of Nipah virus isolates from Bangladesh and Malaysia in the Syrian hamster. PLoS Negl Trop Dis. 2013;7:
e2024 . DOIPubMedGoogle Scholar - Epstein JH, Anthony SJ, Islam A, Kilpatrick AM, Ali Khan S, Balkey MD, et al. Nipah virus dynamics in bats and implications for spillover to humans. Proc Natl Acad Sci U S A. 2020;117:29190–201. DOIPubMedGoogle Scholar
- Yadav PD, Shete AM, Kumar GA, Sarkale P, Sahay RR, Radhakrishnan C, et al. Nipah virus sequences from humans and bats during Nipah outbreak, Kerala, India, 2018. Emerg Infect Dis. 2019;25:1003–6. DOIPubMedGoogle Scholar
- Naser AM, Hossain MJ, Sazzad HMS, Homaira N, Gurley ES, Podder G, et al. Integrated cluster- and case-based surveillance for detecting stage III zoonotic pathogens: an example of Nipah virus surveillance in Bangladesh. Epidemiol Infect. 2015;143:1922–30. DOIPubMedGoogle Scholar
- Ao TT, Rahman M, Haque F, Chakraborty A, Hossain MJ, Haider S, et al. Low-cost national media-based surveillance system for public health events, Bangladesh. Emerg Infect Dis. 2016;22:720–2. DOIPubMedGoogle Scholar
- Daniels P, Ksiazek T, Eaton BT. Laboratory diagnosis of Nipah and Hendra virus infections. Microbes Infect. 2001;3:289–95. DOIPubMedGoogle Scholar
- Nikolay B, Salje H, Khan AKMD, Sazzad HMS, Satter SM, Rahman M, et al. A framework to monitor changes in transmission and epidemiology of emerging pathogens: lessons from Nipah virus. J Infect Dis. 2020;221(Suppl 4):S363–9. DOIPubMedGoogle Scholar
- Giles JR, Peel AJ, Wells K, Plowright RK, McCallum H, Restif O. Optimizing noninvasive sampling of a zoonotic bat virus. Ecol Evol. 2021;11:12307–21. DOIPubMedGoogle Scholar
- Lo MK, Lowe L, Hummel KB, Sazzad HMS, Gurley ES, Hossain MJ, et al. Characterization of Nipah virus from outbreaks in Bangladesh, 2008-2010. Emerg Infect Dis. 2012;18:248–55. DOIPubMedGoogle Scholar
- Rahman MA, Hossain MJ, Sultana S, Homaira N, Khan SU, Rahman M, et al. Date palm sap linked to Nipah virus outbreak in Bangladesh, 2008. Vector Borne Zoonotic Dis. 2012;12:65–72. DOIPubMedGoogle Scholar
- Burnham KP, Anderson DR. Multimodel inference: understanding AIC and BIC in model selection. Sociol Methods Res. 2004;33:261–304. DOIGoogle Scholar
- Khan MSU, Hossain J, Gurley ES, Nahar N, Sultana R, Luby SP. Use of infrared camera to understand bats’ access to date palm sap: implications for preventing Nipah virus transmission. EcoHealth. 2010;7:517–25. DOIPubMedGoogle Scholar
- Plowright RK, Peel AJ, Streicker DG, Gilbert AT, McCallum H, Wood J, et al. Transmission or within-host dynamics driving pulses of zoonotic viruses in reservoir–host populations. PLoS Negl Trop Dis. 2016;10:
e0004796 . DOIPubMedGoogle Scholar - Khan SU, Gurley ES, Hossain MJ, Nahar N, Sharker MAY, Luby SP. A randomized controlled trial of interventions to impede date palm sap contamination by bats to prevent nipah virus transmission in Bangladesh. PLoS One. 2012;7:
e42689 . DOIPubMedGoogle Scholar
1These first authors contributed equally to this article.
Page created: April 27, 2022
Page updated: June 18, 2022
Page reviewed: June 18, 2022
The conclusions, findings, and opinions expressed by authors contributing to this journal do not necessarily reflect the official position of the U.S. Department of Health and Human Services, the Public Health Service, the Centers for Disease Control and Prevention, or the authors' affiliated institutions. Use of trade names is for identification only and does not imply endorsement by any of the groups named above.