Volume 29, Number 5—May 2023
Dispatch
Spatiotemporal Evolution of SARS-CoV-2 Alpha and Delta Variants during Large Nationwide Outbreak of COVID-19, Vietnam, 2021
Table
Characteristic | No. sequences, n = 1,303 | Alpha, n = 74 | AY.57, n = 1,212 |
---|---|---|---|
Age, y | |||
Median (Q1‒Q3) | 43 (29‒61) | 35 (30–55) | 44 (29‒61) |
Missing |
38 (2.9) |
31 (41.9) |
2 (0.2) |
Sex | |||
M | 689 (52.9) | 22 (29.7) | 661 (54.5) |
F | 578 (44.4) | 21 (28.4) | 551 (45.5) |
Unknown |
36 (2.8) |
31 (41.9) |
|
Region | |||
Central | 120 (9.2) | 24 (32.4) | 94 (7.8) |
Northern | 504 (38.7) | 44 (59.5) | 450 (37.1) |
Southern | 679 (52.1) | 6 (8.1) | 668 (55.1) |
*Values are no. (%) unless indicated otherwise. Characteristics of A.23.1 variant‒infected cases were previously reported (7). Q, quartile.
References
- World Health Organization. COVID-19 in Viet Nam Situation report 101, 2022 [cited 2022 Oct 24]. https://www.who.int/vietnam/internal-publications-detail/covid-19-in-viet-nam-situation-report-101
- Attwood SW, Hill SC, Aanensen DM, Connor TR, Pybus OG. Phylogenetic and phylodynamic approaches to understanding and combating the early SARS-CoV-2 pandemic. Nat Rev Genet. 2022;23:547–62. DOIPubMedGoogle Scholar
- du Plessis L, McCrone JT, Zarebski AE, Hill V, Ruis C, Gutierrez B, et al.; COVID-19 Genomics UK (COG-UK) Consortium. Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK. Science. 2021;371:708–12. DOIPubMedGoogle Scholar
- da Silva Filipe A, Shepherd JG, Williams T, Hughes J, Aranday-Cortes E, Asamaphan P, et al.; COVID-19 Genomics UK (COG-UK) Consortium. Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland. Nat Microbiol. 2021;6:112–22. DOIPubMedGoogle Scholar
- Lemey P, Ruktanonchai N, Hong SL, Colizza V, Poletto C, Van den Broeck F, et al. Untangling introductions and persistence in COVID-19 resurgence in Europe. Nature. 2021;595:713–7. DOIPubMedGoogle Scholar
- Chau NVV, Hong NTT, Ngoc NM, Anh NT, Trieu HT, Nhu LNT, et al.; for OUCRU COVID-19 research group. Rapid whole-genome sequencing to inform COVID-19 outbreak response in Vietnam. J Infect. 2021;82:276–316. DOIPubMedGoogle Scholar
- Github. Co-lineages/pangolin [cited 2023 Mar 7]. https://github.com/cov-lineages/pangoli
- Spectrum COV. Detect and analyze variants of SARS-CoV-2 [cited 2023 Mar 7]. https://cov-spectrum.org/explore/Vietnam/AllSamples/Past6M
- Eales O, Page AJ, de Oliveira Martins L, Wang H, Bodinier B, Haw D, et al.; COVID-19 Genomics UK (COG-UK) Consortium. SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2. BMC Infect Dis. 2022;22:647. DOIPubMedGoogle Scholar
- McCrone JT, Hill V, Bajaj S, Pena RE, Lambert BC, Inward R, et al.; COVID-19 Genomics UK (COG-UK) Consortium. Context-specific emergence and growth of the SARS-CoV-2 Delta variant. Nature. 2022;610:154–60. DOIPubMedGoogle Scholar
- Our World in Data. Vietnam: coronavirus pandemic country profile [cited 2023 Mar 7]. https://ourworldindata.org/coronavirus/country/vietnam
- Duerr R, Dimartino D, Marier C, Zappile P, Levine S, Francois F, et al. Clinical and genomic signatures of SARS-CoV-2 Delta breakthrough infections in New York. EBioMedicine. 2022;82:
104141 . DOIPubMedGoogle Scholar
1These authors contributed equally to this article.
2Members of the working group are shown at the end of this article.
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