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Volume 30, Number 10—October 2024
Research

Population Structure and Antimicrobial Resistance in Campylobacter jejuni and C. coli Isolated from Humans with Diarrhea and from Poultry, East Africa

Nigel P. FrenchComments to Author , Kate M. Thomas, Nelson B. Amani, Jackie Benschop, Godfrey M. Bigogo, Sarah Cleaveland, Ahmed Fayaz, Ephrasia A. Hugho, Esron D. Karimuribo, Elizabeth Kasagama, Ruth Maganga, Matayo L. Melubo, Anne C. Midwinter, Blandina T. Mmbaga, Victor V. Mosha, Fadhili I. Mshana, Peninah Munyua, John B. Ochieng, Lynn Rogers, Emmanuel Sindiyo, Emanuel S. Swai, Jennifer R. Verani, Marc-Alain Widdowson, David A. Wilkinson, Rudovick R. Kazwala, John A. Crump1, and Ruth N. Zadoks1
Author affiliations: Massey University, Palmerston North, New Zealand (N.P. French, J. Benschop, A. Fayaz, A.C. Midwinter, L. Rogers, D.A. Wilkinson); Ministry for Primary Industries, Wellington, New Zealand (K.M. Thomas); Kilimanjaro Clinical Research Institute, Kilimanjaro Christian Medical Centre, Moshi, Tanzania (N.B. Amani, E.A. Hugho, E. Kasagama, M.L. Melubo, B.T. Mmbaga, V.V. Mosha, F.I. Mshana); Centre for Global Health Research, Kenya Medical Research Institute, Kisumu, Kenya (G.M. Bigogo, J.B. Ochieng); University of Glasgow, Glasgow, Scotland, UK (S. Cleaveland, R. Maganga, R.N. Zadoks); Sokoine University of Agriculture, Morogoro, Tanzania (E.D. Karimuribo, R.R. Kazwala); Kilimanjaro Christian Medical University College, Moshi (B.T. Mmbaga); US Centers for Disease Control and Prevention, Nairobi, Kenya (P. Munyua, J.R. Verani, M.-A. Widdowson); Nelson Mandela African Institution of Science and Technology, Arusha, Tanzania (E. Sindiyo); Ministry of Livestock and Fisheries, Dodoma, Tanzania (E.S. Swai); University of Otago, Dunedin, New Zealand (J.A. Crump); University of Sydney, Sydney, New South Wales, Australia (R.N. Zadoks)

Main Article

Figure 2

Minimum spanning tree population structure of Campylobacter jejuni and C. coli isolated from humans with diarrhea and from poultry from Kenya and Tanzania, 2006–2017 (human) or 2016–2017 (poultry), based on core genome multilocus sequence types profiles. A) Plot colored by host (human or poultry) with CC indicated in each node; B) plot colored by CC with sequence type indicated in each node. Core-genome multilocus sequence type allele differences are indicated on each branch. CC, clonal complex; UA, unassigned.

Figure 2. Minimum spanning tree population structure of Campylobacter jejuni and C. coli isolated from humans with diarrhea and from poultry from Kenya and Tanzania, 2006–2017 (human) or 2016–2017 (poultry), based on core genome multilocus sequence types profiles. A) Plot colored by host (human or poultry) with CC indicated in each node; B) plot colored by CC with sequence type indicated in each node. Core-genome multilocus sequence type allele differences are indicated on each branch. CC, clonal complex; UA, unassigned.

Main Article

1These senior authors contributed equally to this article.

Page created: August 06, 2024
Page updated: September 24, 2024
Page reviewed: September 24, 2024
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