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Volume 32, Number 6—June 2026
Commentary
Phenotypic and Genomic Characterization of Antimicrobial-Resistant Neisseria gonorrhoeae of Public Health Concern
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The increasing rates of antimicrobial resistance (AMR) in Neisseria gonorrhoeae globally pose a major threat to the management of gonorrhea (1). In the United States and many other developed countries, ceftriaxone, a third-generation cephalosporin, is the recommended therapy for the treatment of uncomplicated gonorrhea (2,3). In Australia, dual treatment with ceftriaxone and azithromycin is currently recommended (4). To mitigate the threat of AMR on public health, surveillance of AMR in N. gonorrhoeae is critical for monitoring antimicrobial susceptibility trends, assessing emergence of AMR, and guiding treatment recommendations (5).
In this issue, Walker et al. (4) describe the results of an integrated phenotypic, epidemiologic, and genomic analysis of N. gonorrhoeae isolates collected in New South Wales (NSW), Australia, as part of a comprehensive surveillance program during January 2022–December 2024. The isolates were subjected to antimicrobial susceptibility testing and classified as N. gonorrhoeae of public health concern because they displayed either decreased susceptibility (DS) to ceftriaxone (MIC >0.125 mg/L) or high-level resistance (HLR) to azithromycin (MIC >256 mg/L). In NSW, detection of an N. gonorrhoeae isolate of public health concern prompts a public health response, including collection of samples from each site of infection for test-of-cure (TOC) and enhanced surveillance protocols for identifying treatment failures, informing of emerging resistance trends, and enhancing AMR surveillance. That type of systematic monitoring for treatment failures helps enhance AMR surveillance practices and is a key component of the World Health Organization global action plan to control the spread and impact of AMR in N. gonorrhoeae (5).
In the analysis by Walker et al., of the 54 patients with ceftriaxone DS N. gonorrhoeae, 46 (85.2%) returned for TOC; of those, 2 (4.3%) returned a positive TOC result by nucleic acid amplification test (NAAT) for N. gonorrhoeae >2 weeks after treatment, which is suggestive of treatment failure. The high return rate for follow-up TOC reported in this study is notable, considering that other studies have reported lower return rates of 41%–64% (6–9). In addition, the prospective evaluation and identification of isolates of public health concern helped to identify treatment failures which might otherwise have remained undiagnosed, suggesting that the targeted public health response approach might be a suitable intervention to identify persons requiring retreatment and prevent onward transmission of ceftriaxone DS N. gonorrhoeae.
Despite increasing rates of ceftriaxone-resistant N. gonorrhoeae globally (10), reporting and confirmation of treatment failure cases remain low; possible causes are inconsistent treatment regimens, limited access to culture diagnostics, and heterogenous definitions of treatment failures (11). Furthermore, ceftriaxone resistance, for which MIC breakpoints have not been clearly or uniformly defined globally, might not always result in treatment failure (11), which suggests that current ceftriaxone resistance breakpoints might need to be reexamined (12). Of note, the Clinical and Laboratory Standards Institute guidelines recommend classifying N. gonorrhoeae isolates with ceftriaxone MIC <0.125 mg/L as susceptible and those with MIC >0.5 mg/L as resistant (13). In the study by Walker et al., of the patients with ceftriaxone DS (MIC >0.125 mg/L) who underwent TOC, 44/46 (95.7%) returned a negative NAAT result. That finding suggests that dual therapy with ceftriaxone and azithromycin was effective in eradicating almost all infections caused by ceftriaxone DS N. gonorrhoeae but does not conclusively demonstrate the clinical significance of the >0.125 mg/L breakpoint for defining ceftriaxone DS or resistance.
The increasing rates of ceftriaxone-resistant N. gonorrhoeae globally have been driven by surges of N. gonorrhoeae harboring the mosaic penA-60 allele in the Asia Pacific region (10). In the study by Walker et al., 45% of ceftriaxone DS N. gonorrhoeae isolates harbored the penA-60 allele; that finding is consistent with global reports that the penA-60 allele is the most common genetic variation associated with ceftriaxone DS and resistance (10,14). Network analysis revealed 5 different ceftriaxone DS clusters, including a large cluster of 13 isolates, which suggested local transmission of ceftriaxone DS N. gonorrhoeae. The study also provided evidence of overseas acquisition of ceftriaxone DS N. gonorrhoeae and local transmission of those overseas-acquired infections, highlighting the possibility of further emergence of ceftriaxone resistance in Australia through importation of resistant strains.
Walker et al. also reported on cases of N. gonorrhoeae with azithromycin HLR, which were primarily from nonheterosexual patients (95%), and patients with a history of sexually transmitted infections (70%); cases were approximately evenly distributed across the anatomic sites (urogenital tract, rectum, and pharynx). Of note, whereas genomic analysis identified 2 separate but connected clusters (17/40 cases) of N. gonorrhoeae with HLR, many (19 [47.5%]) cases lacked genetic relatedness, suggesting that different strains of N. gonorrhoeae with azithromycin HLR are circulating in NSW, Australia. That finding, together with the post–COVID-19 (2022–2024) increase of gonorrhea cases in NSW caused by azithromycin HLR N. gonorrhoeae, is consistent with the evolving global epidemiology of N. gonorrhoeae with azithromycin HLR (15). Of note, N. gonorrhoeae multilocus sequence type (MLST) ST9363, which was the second most common MLST (22.5%, 9/40) of cases with HLR reported by Walker et al, is the most widely disseminated ST globally in N. gonorrhoeae with HLR to azithromycin (15). Although azithromycin HLR was not associated with treatment failures in that study, the increasing rates of N. gonorrhoeae with this phenotype is an example of the rapid and constant evolution of AMR in N. gonorrhoeae.
The public health approach described by Walker et al. involving phenotypic, genotypic, and epidemiologic analysis of N. gonorrhoeae of public health concern is a practical and effective tool to identify treatment failures, prevent further emergence of ceftriaxone resistance, and ultimately help to preserve the clinical utility of ceftriaxone. Additional public health approaches, including monitoring of treatment failures in pharyngeal gonorrhea, which can be caused by ceftriaxone-susceptible N. gonorrhoeae, are necessary to prevent onward transmission of antimicrobial-resistant gonorrhea. Culture-based characterization of AMR in N. gonorrhoeae needs to be expanded to establish ceftriaxone resistance breakpoints. Finally, clinical trials are warranted not only to determine the efficacy of ceftriaxone in the era of increasing ceftriaxone resistance but also to better define the relationship between AMR in N. gonorrhoeae and treatment failures.
Dr. Melendez is an assistant professor of medicine in the Division of Infectious Diseases at The Johns Hopkins School of Medicine. His main research interests are focused on the development and translation of novel approaches for characterization of bacterial pathogens, with an emphasis on antimicrobial-resistant Neisseria gonorrhoeae.
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Original Publication Date: May 27, 2026
Table of Contents – Volume 32, Number 6—June 2026
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Please use the form below to submit correspondence to the authors or contact them at the following address:
Johan H. Melendez, Johns Hopkins School of Medicine, Mason F. Lord Building, 5200 Eastern Ave, Rm 675, Baltimore, MD 21224, USA
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