Volume 15, Number 1—January 2009
Dispatch
Novel Human Rotavirus Genotype G5P[7] from Child with Diarrhea, Cameroon
Mathew D. Esona1
, Annelise Geyer1, Krisztian Banyai, Nicola Page1, Maryam Aminu1, George E. Armah1, Jennifer Hull, Duncan A. Steele1, Roger I. Glass, and Jon R. Gentsch
, Annelise Geyer1, Krisztian Banyai, Nicola Page1, Maryam Aminu1, George E. Armah1, Jennifer Hull, Duncan A. Steele1, Roger I. Glass, and Jon R. Gentsch
Table 2
Nucleotide/amino acid identities of rotavirus 6784/2000/ARN gene segments with cognate gene sequences of 36 known human and animal rotavirus sequences from GenBank*
| Strains† | Nucleotide/amino acid identity, % |
||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| VP1 | VP2 | VP3 | VP4 | VP6 | VP7 | NSP1 | NSP2 | NSP3 | NSP4 | NSP5 | |
| Ku/G1P[8]/Hu | 88/94 | 96/96 | 90/94 | 61/55 | 90/98 | 74/79 | 85/88 | 91/94 | 94/94 | 89/93 | 94/96 |
| DRC88/G8P[8]/Hu | 79/85 | 76/77 | 69/73 | – | 76/93 | 74/81 | 74/75 | 85/93 | 84/90 | 79/83 | 90/93 |
| OSU/G5P[7]/Po | – | – | 86/90 | 90/89 | 80/90 | 86/94 | 86/89 | – | 89/95 | 88/96 | 98/100 |
| RMC321/G9P[19]/Hu | 82/93 | 84/94 | – | – | 80/91 | – | 81/87 | 88/91 | 89/93 | 88/95 | 97/98 |
| Tb-chen/G2P[4]/Hu | 79/83 | 77/79 | 69/72 | 62/56 | 77/91 | – | 77/76 | 88/92 | 85/90 | 81/83 | 89/92 |
| AU-1/G3P[9]/Hu | 78/84 | 77/84 | 74/76 | 59/56 | 76/91 | 78/85 | 69/72 | 81/89 | 82/93 | 78/82 | 93/97 |
| ST-3/G4P[6]/Hu | – | – | 91/94 | – | – | – | 94/94 | – | 97/97 | 88/91 | – |
| 69M/G8P[10]/Hu | – | – | 71/75 | – | – | – | 77/76 | – | 82/88 | – | 94/95 |
| T152/G12P[9]/Hu | – | – | – | 60/57 | 76/91 | 75/82 | 70/71 | – | – | – | – |
| R14a/G9P[8]/Hu | – | – | – | – | – | – | 97/97 | – | – | – | – |
| Wa/G1P[8]/Hu | 85/94 | 93/93 | 95/96 | 62/55 | 88/98 | 74/78 | 85/88 | 88/91 | 97/97 | 90/95 | 95/95 |
| DS-1/G2P[4]/Hu | 79/84 | – | 70/75 | 62/56 | 79/92 | 72/74 | 76/76 | 88/94 | 83/89 | 81/84 | – |
| 30/96/G3P[14]/Lp | 79/85 | 79/85 | 73/82 | 61/56 | – | – | – | 86/95 | 83/90 | 79/83 | 91/96 |
| PRICE/Po | – | – | – | – | – | – | – | – | 98/98 | – | – |
| RRV/G3P[3]/Si | – | – | – | 69/72 | – | – | – | – | 82/92 | 79/82 | – |
| PO-13/G18P[17]/Av | 67/61 | 63/56 | 62/57 | 39/20 | 70/77 | 65/58 | – | 56/46 | 60/58 | – | 63/52 |
| KJ75/G5P[5]/Bo | – | – | – | – | – | 86/93 | – | 89/94 | – | – | – |
| US1205/G9P[6]/Hu | – | – | – | 61/57 | 76/91 | 77/84 | – | – | – | 80/83 | – |
| EW/G16P[16]/Mu | – | – | – | 62/60 | – | – | – | – | – | 62/62 | – |
| KUN/G2P[4]/Hu | – | – | – | – | – | – | – | – | – | 81/83 | 90/93 |
| CU-1/G3P[3]/Ca | – | – | – | – | – | – | – | – | – | 78/84 | – |
| FRV-1/G3P[9]/Fe | – | – | – | – | – | – | – | – | – | 79/82 | – |
| EHP/G16P[20]/Mu | – | – | – | 65/66 | – | – | – | – | – | 62/61 | – |
| SA-11/G3P[1]/Si | 77/85 | 79/84 | – | 71/72 | – | – | – | – | – | – | 94/96 |
| CMP034/G2P[27]/Po | – | – | – | – | – | – | – | – | – | – | 99/100 |
| YM/G11P[7]/Po | 88/94 | – | – | 85/88 | 81/90 | 82/90 | – | – | – | – | – |
| Gottfried/G4P[6]/Po | 92/96 | – | – | 61/57 | 88/98 | – | – | – | – | – | – |
| JL94/G5P[7]/Po | – | – | – | 90/89 | – | – | – | – | – | – | – |
| rj6906/03/Hu | – | – | – | – | 98/99 | – | – | – | – | – | – |
| MRC3105/G5P[8]/Hu‡ | – | – | – | – | – | 100/100 | – | – | – | – | – |
| CC117/G5/Po | – | – | – | – | – | 91/97 | – | – | – | – | – |
| C134/G5/Po | – | – | – | – | – | 90/97 | – | – | – | – | – |
| LL4260/G5P[6]/Hu | – | – | – | – | – | 90/94 | – | – | – | – | – |
| KH210/G5P[6]/Hu | – | – | – | – | – | 89/93 | – | – | – | – | – |
| IAL-28/G5P[8]/Hu | – | – | – | – | – | 85/92 | – | – | – | – | – |
| H-1/G5P[7]/Eq | – | – | – | – | 81/90 | 86/94 | – | – | – | 85/93 | – |
*ARN, African Rotavirus Surveillance Network; VP, structural protein; NSP, nonstructural protein; –, not included or not sequenced. High and moderate nucleotide/amino acid percentage identities are in boldface.
†Species of origin. Hu, human; Po, porcine; Lp, lapine; Si, simian; Av, avian; Bo, bovine; Ca, canine; Fe, feline; Mu, murine; Eq, equine.
‡VP7 gene of MRC3105 was derived from a porcine rotavirus.
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