Identifying Influenza Viruses with Resequencing Microarrays
Zheng Wang*†, Luke T. Daum‡, Gary J. Vora*, David Metzgar§, Elizabeth A. Walter¶, Linda C. Canas‡, Anthony P. Malanoski*, Baochuan Lin*, and David A. Stenger*
Author affiliations: *Naval Research Laboratory, Washington, DC, USA; †NOVA Research Inc., Alexandria, Virginia, USA; ‡Air Force Institute for Operational Health, Brooks City Base, San Antonio, Texas, USA; §Naval Health Research Center, San Diego, California, USA; ¶Lackland Air Force Base, San Antonio, Texas, USA
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Table 1
Influenza sequences tiled on the respiratory pathogen microarray version 1
Gene |
Prototype |
GenBank accession no. |
Tiled region |
Length (bp) |
A/HA1 |
A/New Caledonia/20/99 (H1N1) |
AJ344014 |
110–808 |
699 |
A/HA3 |
A/Denmark/59/03 (H3N2) |
AY531939 |
120–913 |
794 |
A/HA5 |
A/Hong Kong/486/97 (H5N1) |
AF102671 |
1106–1629 |
524 |
A/NA1 |
A/Chile/1/83 (H1N1) |
X15281 |
4–1363 |
1,360 |
A/NA2 |
A/Panama/2007/99 (H3N2) |
AJ457937 |
1–1446 |
1,446 |
A/M |
A/NWS/33 (H1N1) |
L25814 |
1–923 |
923 |
B/HA |
B/Yamanashi/166/98 |
AF100355 |
269–952 |
684 |
B/NA |
B/Yamagata/16/88 |
AY1139081 |
1–896 |
896 |
B/M |
B/Yamagata/16/88 |
AF100378 |
1–362 |
362 |
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Page created: January 24, 2012
Page updated: January 24, 2012
Page reviewed: January 24, 2012
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