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Volume 12, Number 4—April 2006

Identifying Influenza Viruses with Resequencing Microarrays

Zheng Wang*†, Luke T. Daum‡, Gary J. Vora*, David Metzgar§, Elizabeth A. Walter¶, Linda C. Canas‡, Anthony P. Malanoski*, Baochuan Lin*, and David A. Stenger*Comments to Author 
Author affiliations: *Naval Research Laboratory, Washington, DC, USA; †NOVA Research Inc., Alexandria, Virginia, USA; ‡Air Force Institute for Operational Health, Brooks City Base, San Antonio, Texas, USA; §Naval Health Research Center, San Diego, California, USA; ¶Lackland Air Force Base, San Antonio, Texas, USA

Main Article

Table 4

Strain component analysis of the FluMist vaccine with respiratory pathogen microarray (RPM) version 1*

Segment Base call rate† (%) Strain identification GenBank accession no.
A/HA1 86.8 A/New Caledonia/20/99 AJ344014
A/NA1 65.6 A/New Caledonia/20/99 AJ518092
A/HA3 86.5 A/Wyoming/3/03 AY531033
A/NA2 78.2 A/Wyoming/3/03 AY531034
A/M 75.9 A/Ann Arbor/6/60 M23978
B/HA 77.1 B/Jilin/20/2003 ISDN40908
B/NA 83.5 B/Yamagata/1246/2003‡ AB120256
B/M 78.4 B/Ann Arbor/1/66 M20175

*HA, hemagglutinin; NA, neuramindase; M, matrix.
†No. of base calls generated from the RPM version 1 divided by the length of the tiled probe sequence.
‡The NA sequence of B/Jilin/20/2003 strain was not available in the influenza database.

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