Volume 16, Number 12—December 2010
Research
Reassortant Group A Rotavirus from Straw-colored Fruit Bat (Eidolon helvum)
Table
Newly designed primers used for amplification and sequencing of bat rotavirus genes*
Primer | Sequence, 5′ → 3′ | Gene | Nucleotide position, strand |
---|---|---|---|
VP1_Bat | GCT TCG AAT GGA GAA TCG CG | VP1 | 596–576, – |
VP1_Bat | CTC CTG GTG TGT ACC TAC C | VP1 | 485–504, + |
VP1_Bat | CCT CGT GTG TAA ATA CGG ACA | VP1 | 1130–1151, + |
VP2_Bat | CAG AGC AGG CTA AGA AGC AGA CTA | VP2 | 393–370, – |
VP2_Bat | GCA GCA CCA ATT TGG GTT GAG | VP2 | 810–830, + |
VP2_Bat | CTC AAC CCA AAT TGG TGC TG | VP2 | 830–810, – |
VP2_Bat | CTG AAT CTG AGC TTC AGT TG | VP2 | 1206–1187, – |
VP2_Bat | GAT GTA GCT AGA GTG CCA G | VP2 | 2247–2265, + |
VP2_Bat | CTG GCA CTC TAG CTA CAT C | VP2 | 2265–2247, – |
VP2_Bat | GGT GGC GAA TTA TGA TTG G | VP2 | 2723–2741, + |
VP6_Bat | TCG GTC TAT GGA ATG TGA AAC CTG TTC | VP6 | 380–354, – |
VP7_Bat | CAG ATG TCG TCG ATA ATG | VP7 | 693–710, + |
VP7_Bat | TGG CGT ACG CAG TGT CCA TTG AC | VP7 | 218–196, – |
VP7_Bat | CGA GTT GGC GTA CGC AGT G | VP7 | 258–240, – |
NSP2_Bat | CAA CTT CCA CAT TGT AAA CGC | NSP2 | 574–555, – |
NSP2_Bat | CTT TCG CGA ATA CAC TGG T | NSP2 | 1087–1068, – |
NSP2_Bat | CT GAT AGA GTG TAT GCG AC | NSP2 | 727–747, + |
NSP3_Bat | CCT CAC TCT CAT CTT TCG GGT CTT C | NSP3 | 401–376, – |
NSP3_Bat | GGA GTT ACC GAG TGA AGC GAA GG | NSP3 | 673–695, + |
NSP5_Bat | ACG CCA GCA TCT GCA TTT GTC | NSP5 | 279–258, – |
*VP, viral protein; NSP, nonstructural protein.