Volume 18, Number 7—July 2012
Dispatch
Role of Birds in Dispersal of Etiologic Agents of Tick-borne Zoonoses, Spain, 2009
Table 1
PCR primer pairs used in study of the role of birds in dispersal of etiologic agents of tick-borne zoonoses, Spain, 2009*
Bacteria | Gene target | Primer name | Primer sequence, 5′ → 3′ | Amplified fragment, bp | Annealing temp., °C | Ref. |
---|---|---|---|---|---|---|
Anaplasma spp. | 16S rRNA, nested | ge3a | CACATGCAAGTCGAACGGATTATTC | 932 | 55 | (9) |
ge10r | TTCCGTTAAGAAGGAT CTAATCTCC | |||||
ge9f | AACGGATTATTCTTTATAGCTTGCT | 546 | 55 | (9) | ||
ge2 | GGCAGTATTAAAAGCAGCTCCAGG | |||||
msp | msp3F | CCAGCGTTTAGCAAGATAAGAG | 334 | 56 | (10) | |
msp3R | GCCCAGTAACAACATCATAAGC | |||||
Borrelia spp. | flaB, nested† | Outer 1 | AARGAATTGGCAGTTCAATC | 497 | 52 | (11) |
Outer 2 | GCATTTTCWATTTTAGCAAGTGATG | |||||
Inner 1 | ACATATTCAGATGCAGACAGAGGTTCTA | 389 | 55 | (11) | ||
Inner 2 | GAAGGTGCTGTAGCAGGTGCTGGCTGT | |||||
5S-23S intergenic spacer, nested | 23SC1 | TAAGCTGACTAATACTAATTACCC | 380 | 52 | (12) | |
23SN1 | ACCATAGACTCTTATTACTTTGAC | |||||
5SCB | GAGAGTAGGTTATTGCCAGGG | 226 | 55 | (12) | ||
23SN2 | ACCATAGACTCTTATTACTTTGACCA | |||||
Rickettsia spp. | ompA, seminested | Rr190.70p | ATGGCGAATATTTCTCCAAAA | 631 | 46 | (13,14) |
Rr190.701n | GTTCCGTTAATGGCAGCATCT | |||||
Rr190.70p | ATGGCGAATATTTCTCCAAAA | 532 | 48 | (14) | ||
Rr190.602n | AGTGCAGCATTCGCTCCCCCT | |||||
ompB, nested | rompB OF | GTAACCGGAAGTAATCGTTTCGTAA | 511 | 54 | (15) | |
rompB OR | GCTTTATAACCAGCTAAACCACC | |||||
rompB SFG IF | GTTTAATACGTGCTGCTAACCAA | 420 | 56 | (15) | ||
rompB SFG/TG IR | GGTTTGGCCCATATACCATAAG | |||||
gltA central region, nested | RpCS.877p | GGGGGCCTGCTCACGGCGG | 381 | 48 | (14) | |
RpCS1258n | ATTGCAAAAAGTACAGTGAACA | |||||
RpCS.896p | GGCTAATGAAGCAGTGATAA | 337 | 54 | (15) | ||
RpCS.1233n | GCGACGGTATACCCATAGC |
*Temp., temperature; ref., reference; msp, p44 major surface protein gene; flaB, flagellin gene; ompB, 120-kDa genus common antigen gene; ompA, 190-kDa protein antigen gene; gltA, citrate synthase gene.
†R = A/G; W = A/T.
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